##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934115.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 361532 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.823647699235476 31.0 31.0 34.0 30.0 34.0 2 32.0361295818904 33.0 31.0 34.0 30.0 34.0 3 32.108159167100006 33.0 31.0 34.0 30.0 34.0 4 35.5819235918259 37.0 35.0 37.0 33.0 37.0 5 30.184749897657746 37.0 35.0 37.0 0.0 37.0 6 24.306188663797396 35.0 17.0 37.0 0.0 37.0 7 30.599573481738823 35.0 19.0 37.0 17.0 37.0 8 34.22398847128331 35.0 32.0 37.0 32.0 37.0 9 36.79318566544593 38.0 37.0 39.0 34.0 39.0 10 36.91324419415155 39.0 37.0 39.0 33.0 39.0 11 37.113248619762565 39.0 37.0 39.0 34.0 39.0 12 37.08951074870274 39.0 37.0 39.0 34.0 39.0 13 36.93865549937488 39.0 37.0 39.0 33.0 39.0 14 37.96436553334145 40.0 37.0 41.0 33.0 41.0 15 37.85991834747685 40.0 37.0 41.0 33.0 41.0 16 38.11499673611188 40.0 37.0 41.0 34.0 41.0 17 38.142020623347314 40.0 37.0 41.0 34.0 41.0 18 38.245477578748215 40.0 37.0 41.0 34.0 41.0 19 38.26815053715853 40.0 37.0 41.0 34.0 41.0 20 38.218453691512785 40.0 37.0 41.0 34.0 41.0 21 38.095571069780824 40.0 37.0 41.0 34.0 41.0 22 38.1449138665457 40.0 37.0 41.0 34.0 41.0 23 38.107047232333514 40.0 37.0 41.0 34.0 41.0 24 38.106944890078886 40.0 37.0 41.0 34.0 41.0 25 37.85954217054092 40.0 36.0 41.0 34.0 41.0 26 37.691866833364685 39.0 36.0 41.0 33.0 41.0 27 36.969728820685305 39.0 36.0 41.0 32.0 41.0 28 37.27145591538232 39.0 36.0 41.0 32.0 41.0 29 37.28585021519534 39.0 35.0 41.0 32.0 41.0 30 37.34859984731642 39.0 36.0 40.0 33.0 41.0 31 37.29011816381399 39.0 35.0 40.0 33.0 41.0 32 37.23451036146178 39.0 35.0 40.0 32.0 41.0 33 36.33855924233539 39.0 35.0 40.0 31.0 41.0 34 36.76550900058639 39.0 35.0 40.0 31.0 41.0 35 37.01431408561344 39.0 35.0 40.0 31.0 41.0 36 37.17434417976832 39.0 35.0 40.0 32.0 41.0 37 37.18452031908655 39.0 35.0 40.0 33.0 41.0 38 37.052645408981775 39.0 35.0 40.0 32.0 41.0 39 37.068749101047764 39.0 35.0 40.0 32.0 41.0 40 37.09231824568779 39.0 35.0 40.0 32.0 41.0 41 37.10977728112587 39.0 35.0 40.0 32.0 41.0 42 37.28456955400905 39.0 35.0 40.0 33.0 41.0 43 37.19014914309107 39.0 35.0 40.0 33.0 41.0 44 37.12983636303287 39.0 35.0 40.0 32.0 41.0 45 37.02660345418939 39.0 35.0 40.0 32.0 41.0 46 36.98369438943164 39.0 35.0 40.0 32.0 41.0 47 36.93814102209486 39.0 35.0 40.0 32.0 41.0 48 36.94927419979421 39.0 35.0 40.0 32.0 41.0 49 37.04965535554253 39.0 35.0 40.0 32.0 41.0 50 36.98119115320359 39.0 35.0 40.0 32.0 41.0 51 36.21899306285474 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 1.0 11 2.0 12 1.0 13 3.0 14 4.0 15 14.0 16 17.0 17 33.0 18 29.0 19 74.0 20 135.0 21 240.0 22 349.0 23 556.0 24 827.0 25 1188.0 26 1693.0 27 2211.0 28 2861.0 29 3872.0 30 5702.0 31 8239.0 32 12166.0 33 19827.0 34 27063.0 35 35509.0 36 45199.0 37 66372.0 38 74936.0 39 52377.0 40 29.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.074582609561535 3.940730004536251 54.18662801633051 18.798059369571714 2 20.119934058395938 5.66146288571966 52.56491818151644 21.65368487436797 3 21.96873305820785 5.466459400550989 51.623646039631346 20.941161501609816 4 20.671475830631866 4.532378876558645 50.57671243486054 24.21943285794895 5 15.768175431220474 20.055486098049414 42.100007744819266 22.076330725910847 6 15.599725612117323 29.163670159211357 39.826903289335384 15.409700939335938 7 76.73705232178618 2.1392297224035492 13.909418806633992 7.2142991491762825 8 75.86188774437672 3.1792483099697955 11.312691545976566 9.64617239967693 9 69.6098823893874 5.938340174590354 15.127291636701592 9.324485799320668 10 34.778664129316354 26.11774338094553 21.550789418364072 17.552803071374043 11 27.506278835621746 24.41415974242944 27.31984997178673 20.759711450162087 12 23.809234037374285 20.071252337275816 34.146631556819315 21.972882068530588 13 21.87966763661308 25.73631103194185 33.19014637708418 19.193874954360886 14 17.2972240354934 28.670767732870118 31.198344821481918 22.833663410154564 15 14.850137747142714 25.113129681466646 38.55149751612582 21.485235055264816 16 15.882688116128033 24.336711549738336 32.943418563225386 26.83718177090825 17 16.073542590973965 24.82269895887501 29.650210769724396 29.453547680426627 18 17.641038690904264 23.028666895323234 34.25976123828596 25.070533175486542 19 19.19968356881272 24.327583727028312 31.68875784162951 24.78397486252946 20 21.227719814566896 25.37673013730458 32.10061626633327 21.29493378179525 21 21.207804565017756 26.737328922474358 31.052852859497914 21.002013653009968 22 18.20530409479659 25.4160074350265 28.2566965026609 28.121991967516013 23 18.211942511312966 26.38936525674076 27.486640186760784 27.912052045185487 24 20.845457663498667 23.179414270382708 29.638316940132547 26.33681112598608 25 17.270117168051513 27.333403405507674 27.482214575749865 27.91426485069095 26 18.367115497383356 29.001582155936408 27.827135633913457 24.804166712766783 27 21.977031078853322 28.839494152661455 26.947268844804885 22.236205923680338 28 19.10176692519611 24.564907117488907 32.134638150979725 24.19868780633526 29 19.74348052177954 24.481097108969607 31.620437471648426 24.154984897602425 30 26.431961762720867 25.698416737660846 26.89499131473839 20.9746301848799 31 24.659504552847327 29.498080391224015 24.058174656738547 21.784240399190114 32 21.648706061980683 27.789517940320636 27.72894238960866 22.832833608090016 33 23.33514045782946 26.62336943894316 24.299647057521877 25.741843045705497 34 20.508281424604185 25.598563889226956 28.679895555580142 25.213259130588717 35 20.057698903554872 24.397287100450306 28.765918369604904 26.77909562638992 36 26.86069282940376 24.200624011152538 25.987464456811573 22.951218702632133 37 23.40014161955235 25.03844749565737 30.81774227454278 20.7436686102475 38 22.048670657092593 25.3131119790226 29.58603941006605 23.05217795381875 39 23.179414270382708 22.80102452894903 30.48443844528285 23.535122755385416 40 24.379308055718443 23.688359536638526 29.47014372171758 22.46218868592545 41 18.738866822300654 25.668267262648946 26.434727769602688 29.158138145447705 42 21.823517696912027 22.384463892546165 28.160716063861567 27.631302346680236 43 25.57781883761327 20.31576734562916 27.940818516756472 26.165595300001105 44 22.911941404910216 21.08361085602381 28.997156544925485 27.007291194140493 45 23.234457807331026 20.986800615159932 27.37268070322959 28.406060874279454 46 25.919420687518667 22.061947490125355 30.181284091034822 21.837347731321156 47 19.641691468528375 23.107221490767067 33.727304913534624 23.52378212716993 48 19.437836761337863 21.592832722967813 32.224256773950856 26.745073741743468 49 22.738789374107963 18.015556022703386 34.37869953420444 24.86695506898421 50 23.061305776528773 18.325901994844163 31.10734319506987 27.505449033557195 51 20.38878992730934 18.270305256519478 28.24590907582178 33.094995740349404 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 97.0 1 196.0 2 295.0 3 588.0 4 881.0 5 624.5 6 368.0 7 473.0 8 578.0 9 699.5 10 821.0 11 892.5 12 964.0 13 1027.5 14 1091.0 15 1007.5 16 924.0 17 869.5 18 815.0 19 821.0 20 827.0 21 880.5 22 934.0 23 1013.0 24 1092.0 25 1206.0 26 1665.0 27 2010.0 28 2574.0 29 3138.0 30 3388.0 31 3638.0 32 4423.0 33 5208.0 34 5785.5 35 6363.0 36 7225.0 37 8087.0 38 8982.0 39 9877.0 40 12352.0 41 14827.0 42 18660.0 43 22493.0 44 26980.5 45 31468.0 46 40565.5 47 49663.0 48 54267.5 49 58872.0 50 53204.0 51 47536.0 52 37250.0 53 26964.0 54 22162.0 55 17360.0 56 14514.0 57 11668.0 58 10402.0 59 9136.0 60 7946.5 61 6757.0 62 6121.0 63 5485.0 64 4479.0 65 3473.0 66 2845.0 67 2217.0 68 1817.0 69 1417.0 70 1224.0 71 1031.0 72 876.0 73 721.0 74 615.0 75 391.0 76 273.0 77 229.0 78 185.0 79 121.5 80 58.0 81 55.5 82 53.0 83 39.5 84 26.0 85 18.5 86 11.0 87 6.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 361532.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.913874873271126 #Duplication Level Percentage of deduplicated Percentage of total 1 71.96481204189139 30.88288939244202 2 12.30756074305826 10.563302434455721 3 4.844720445878741 6.237171810312557 4 2.6328980614161104 4.519514318467563 5 1.6659203402728264 3.5745548515652663 6 1.1571971787442628 2.9795888959400187 7 0.8565708221551943 2.5731141157444086 8 0.7016403439303643 2.4088084740373255 9 0.5331448687641617 2.0591380968724606 >10 3.194715556637014 22.497567904764683 >50 0.0833017335854828 2.5162621209379488 >100 0.04826211549000194 3.936535903485628 >500 0.004627874088082378 1.398995210096406 >1k 0.004627874088082378 3.8525564708779347 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 3644 1.0079329077370744 Illumina PCR Primer Index 5 (96% over 25bp) CTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT 2644 0.7313322195545623 Illumina PCR Primer Index 5 (96% over 26bp) TCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 2160 0.5974574864742264 RNA PCR Primer, Index 33 (96% over 27bp) GCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 1704 0.4713275726630008 RNA PCR Primer, Index 33 (96% over 27bp) CCTGTATCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 1338 0.3700917207882013 Illumina PCR Primer Index 5 (96% over 25bp) GAATGATACCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCG 1058 0.29264352809709787 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGC 1031 0.2851753095161701 No Hit CTGTCACTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT 966 0.2671962647843068 Illumina PCR Primer Index 5 (96% over 26bp) TCTGTATCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 798 0.22072734916964476 RNA PCR Primer, Index 33 (96% over 27bp) GAATCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC 724 0.20025889824413884 Illumina PCR Primer Index 5 (95% over 22bp) TCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 641 0.17730104112499032 Illumina PCR Primer Index 5 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 618 0.17093922529679254 Illumina PCR Primer Index 5 (95% over 24bp) CCTGACTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 595 0.16457740946859475 RNA PCR Primer, Index 33 (96% over 27bp) GCTGTATCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 589 0.16291780533949968 RNA PCR Primer, Index 33 (96% over 27bp) TGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 482 0.13332153170397087 RNA PCR Primer, Index 33 (96% over 26bp) TTCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCT 468 0.1294491220694157 RNA PCR Primer, Index 33 (96% over 25bp) CTGTATCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT 460 0.12723631656395562 Illumina PCR Primer Index 5 (96% over 26bp) CGTTCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC 386 0.10676786563844971 RNA PCR Primer, Index 33 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCC 380 0.10510826150935462 No Hit GCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 363 0.10040604981025193 RNA PCR Primer, Index 33 (96% over 26bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7877587599437947 0.0 2 0.0 0.0 0.0 3.0697144374495204 0.0 3 0.0 0.0 0.0 4.106690417445758 0.0 4 0.0 0.0 0.0 5.230519013531306 0.0 5 0.0 0.0 0.0 7.134084949603355 0.0 6 0.0 0.0 0.0 8.395937289091975 0.0 7 0.0 0.0 0.0 10.051669008552492 0.0 8 0.0 0.0 0.0 12.523372758151423 0.0 9 0.0 0.0 0.0 13.564774349158581 0.0 10 0.0 0.0 0.0 15.774260646360489 0.0 11 0.0 0.0 0.0 19.25721651195468 0.0 12 0.0 0.0 0.0 22.67157540687961 0.0 13 0.0 0.0 0.0 23.7251474281668 0.0 14 0.0 0.0 0.0 24.08721772899771 0.0 15 0.0 0.0 0.0 24.64207870949183 0.0 16 0.0 0.0 0.0 26.01429472356527 0.0 17 0.0 0.0 0.0 27.999457862651163 0.0 18 0.0 0.0 0.0 30.376840777579854 0.0 19 0.0 0.0 0.0 31.776440259783367 0.0 20 0.0 0.0 0.0 33.122655809167654 0.0 21 0.0 0.0 0.0 34.7637276921545 0.0 22 0.0 0.0 0.0 36.30328712257836 0.0 23 0.0 0.0 0.0 37.69901419514732 0.0 24 0.0 0.0 0.0 38.83307701669562 0.0 25 0.0 0.0 0.0 39.76356173174159 0.0 26 0.0 0.0 0.0 40.587555181837295 0.0 27 0.0 0.0 0.0 41.377250146598364 0.0 28 0.0 0.0 0.0 42.208435214586814 0.0 29 0.0 0.0 0.0 43.078620979609 0.0 30 0.0 0.0 0.0 44.04561698549506 0.0 31 0.0 0.0 0.0 44.89699390372083 0.0 32 0.0 0.0 0.0 45.73868979786022 0.0 33 0.0 0.0 0.0 46.53861898808404 0.0 34 0.0 0.0 0.0 47.31780312669418 0.0 35 0.0 0.0 0.0 48.14705198986535 0.0 36 0.0 0.0 0.0 48.890831240388124 0.0 37 0.0 0.0 0.0 49.684951816160115 0.0 38 0.0 0.0 0.0 50.3875175641437 0.0 39 0.0 0.0 0.0 51.12991381122556 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGCG 110 0.0 45.000004 5 TCGTTTG 35 1.2088458E-7 45.000004 1 GCGAATC 35 1.2088458E-7 45.000004 17 TTCGTAG 35 1.2088458E-7 45.000004 1 CGTTAGG 65 0.0 45.000004 2 GAGCGAA 35 1.2088458E-7 45.000004 15 AATCTCG 35 1.2088458E-7 45.000004 33 CGAATCG 35 1.2088458E-7 45.000004 18 CCTTAAC 40 6.7921064E-9 45.0 34 GCAAGTC 25 3.8854825E-5 45.0 9 CCCTCTA 20 7.026864E-4 45.0 28 GTATTGC 25 3.8854825E-5 45.0 29 AGTCAAC 25 3.8854825E-5 45.0 12 GTTTACG 20 7.026864E-4 45.0 1 GACCGTT 20 7.026864E-4 45.0 44 TTAGACC 25 3.8854825E-5 45.0 19 CGTTGAA 25 3.8854825E-5 45.0 18 GGATCAT 40 6.7921064E-9 45.0 8 GCGTTAG 25 3.8854825E-5 45.0 1 CGTTCAT 25 3.8854825E-5 45.0 17 >>END_MODULE