SRR2934109.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934109.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1694664
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC	4530	0.26730962597895513	TruSeq Adapter, Index 16 (95% over 24bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGC	4134	0.2439421619860928	No Hit
CTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGCT	4000	0.23603498982689192	TruSeq Adapter, Index 27 (95% over 24bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCG	3612	0.2131395958136834	No Hit
GCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC	3260	0.19236851670891694	TruSeq Adapter, Index 16 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTC	3091	0.18239603838873075	TruSeq Adapter, Index 16 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC	2786	0.16439837041443026	TruSeq Adapter, Index 16 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGCGC	30	2.1661144E-6	45.000004	36
ACGCATA	35	1.2123928E-7	45.0	32
CGTTAGG	560	0.0	42.1875	2
TCGTTAG	305	0.0	42.04918	1
CGTTATT	400	0.0	41.625	1
CCGATAA	55	6.184564E-11	40.909092	15
CGATAAC	55	6.184564E-11	40.909092	16
TATGGGA	3480	0.0	40.34483	4
TAGGGAT	2875	0.0	40.147827	5
TTAGGGA	4805	0.0	40.03642	4
TTATGGG	4460	0.0	39.803814	3
CGTTTAT	485	0.0	39.43299	1
TAGGCGT	80	0.0	39.375004	4
ATGGGCG	620	0.0	39.193546	5
CTTTACG	270	0.0	39.166664	1
TTTACGG	1145	0.0	39.104805	2
TTACGGG	1835	0.0	38.991825	3
TAGGGAC	2120	0.0	38.84434	5
TCAGGGA	2070	0.0	38.804344	4
TTCGTAG	245	0.0	38.57143	1