##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934107.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 695704 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.755030875199797 31.0 31.0 34.0 30.0 34.0 2 31.965992721042284 33.0 31.0 34.0 30.0 34.0 3 32.043800236882355 33.0 31.0 34.0 30.0 34.0 4 35.56565292135736 37.0 35.0 37.0 33.0 37.0 5 29.320864908064348 35.0 33.0 37.0 0.0 37.0 6 23.606558248910456 35.0 10.0 37.0 0.0 37.0 7 30.296745454963606 35.0 19.0 37.0 17.0 37.0 8 34.09938422087554 35.0 32.0 37.0 32.0 37.0 9 36.66903021974863 37.0 35.0 39.0 33.0 39.0 10 36.78784943021745 38.0 37.0 39.0 33.0 39.0 11 36.99773898094592 39.0 37.0 39.0 33.0 39.0 12 37.07406741947725 39.0 37.0 39.0 34.0 39.0 13 36.9857956832216 39.0 37.0 39.0 33.0 39.0 14 38.03569046606028 40.0 37.0 41.0 33.0 41.0 15 37.9014077826202 40.0 37.0 41.0 33.0 41.0 16 38.13254200062095 40.0 37.0 41.0 34.0 41.0 17 38.12304945781539 40.0 37.0 41.0 34.0 41.0 18 38.22540620723756 40.0 37.0 41.0 34.0 41.0 19 38.24458677828502 40.0 37.0 41.0 34.0 41.0 20 38.21489742764164 40.0 37.0 41.0 34.0 41.0 21 38.100376021986364 40.0 37.0 41.0 34.0 41.0 22 38.16255907684877 40.0 37.0 41.0 34.0 41.0 23 38.11670911767073 40.0 37.0 41.0 34.0 41.0 24 38.09526321539045 40.0 37.0 41.0 34.0 41.0 25 37.87345911479595 40.0 37.0 41.0 33.0 41.0 26 37.744144061267434 40.0 37.0 41.0 33.0 41.0 27 36.85689891103113 39.0 36.0 41.0 32.0 41.0 28 37.122498936329244 39.0 36.0 41.0 31.0 41.0 29 37.42495371594816 39.0 36.0 41.0 32.0 41.0 30 37.48891338845256 39.0 36.0 40.0 33.0 41.0 31 37.43840915101825 39.0 36.0 40.0 33.0 41.0 32 37.43179570621989 39.0 36.0 40.0 33.0 41.0 33 36.30521888619298 39.0 35.0 40.0 31.0 41.0 34 36.74952278555248 39.0 35.0 40.0 31.0 41.0 35 37.08607683727562 39.0 35.0 40.0 31.0 41.0 36 37.226944217655785 39.0 35.0 40.0 32.0 41.0 37 37.18870956613732 39.0 35.0 40.0 32.0 41.0 38 37.077231121281464 39.0 35.0 40.0 32.0 41.0 39 37.22463432724262 39.0 35.0 40.0 32.0 41.0 40 37.234556650529534 39.0 35.0 40.0 32.0 41.0 41 37.18746622126652 39.0 35.0 40.0 32.0 41.0 42 37.201738095511885 39.0 35.0 40.0 32.0 41.0 43 37.00831675540172 39.0 35.0 40.0 32.0 41.0 44 36.956909835217274 39.0 35.0 40.0 31.0 41.0 45 36.97652737371066 39.0 35.0 40.0 32.0 41.0 46 36.946815024780655 39.0 35.0 40.0 32.0 41.0 47 36.87057714200292 39.0 35.0 40.0 31.0 41.0 48 36.7911180617044 39.0 35.0 40.0 31.0 41.0 49 36.814112036153304 39.0 35.0 40.0 32.0 41.0 50 36.660332555224635 39.0 35.0 40.0 32.0 41.0 51 35.832001828363786 38.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 4.0 11 7.0 12 5.0 13 13.0 14 8.0 15 25.0 16 28.0 17 48.0 18 81.0 19 154.0 20 238.0 21 431.0 22 717.0 23 1131.0 24 1740.0 25 2540.0 26 3604.0 27 4721.0 28 6248.0 29 8476.0 30 11296.0 31 16596.0 32 23961.0 33 36957.0 34 50561.0 35 67029.0 36 91048.0 37 132377.0 38 138921.0 39 96705.0 40 31.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.830393385692766 4.31835953221485 53.186843830134656 18.66440325195773 2 19.758977956142267 4.71105527638191 51.98403343950876 23.545933327967067 3 20.081960143969273 4.800892333521153 52.38204753745846 22.735099985051114 4 20.52855812241988 4.607562986557501 49.83843703644079 25.025441854581832 5 14.660545289375943 22.712532916297736 40.0096880282419 22.61723376608443 6 15.949311776272667 29.298523509998503 39.94083690765038 14.811327806078447 7 76.92006945482561 2.382909973206996 13.530035762335707 7.166984809631682 8 75.3771719006934 3.1036187804008604 11.674936467233191 9.84427285167255 9 68.4831480054736 6.112800846336948 16.168082977818152 9.235968170371308 10 34.164529742534185 26.986908225337213 22.456820716856594 16.391741315272014 11 25.320538619872817 25.203678575946093 28.030311741775236 21.44547106240585 12 24.509417798374024 19.708669204144293 34.65036854754321 21.13154444993848 13 22.623989512781296 23.708214987983396 33.77614617710981 19.891649322125502 14 17.88720490323471 26.432936996193785 31.94059542564079 23.739262674930718 15 15.086444809861666 25.03507238710716 37.80688338718765 22.071599415843522 16 16.528437381415085 23.656325103779768 33.5099410093948 26.305296505410347 17 15.330226648114714 24.806526913744925 30.840702367673607 29.02254407046675 18 17.066453549210582 22.913049227832527 34.74926118004208 25.2712360429148 19 19.748916205742674 24.905994503409495 31.48566056828766 23.859428722560168 20 22.660499292802687 25.36955371824799 31.27005163115348 20.699895357795846 21 21.633482055586857 26.841731541000197 29.996952727021835 21.527833676391108 22 18.36945022595817 25.036078562147118 29.12589262099974 27.468578590894978 23 18.587358991755114 25.5702137690742 27.899940204454772 27.942487034715914 24 21.559456320504122 22.82666191368743 29.153346825661487 26.460534940146957 25 19.815180019088576 24.90570702482665 26.630578521900116 28.648534434184654 26 21.762847417867366 25.20468475098605 28.214872991962096 24.81759483918448 27 23.09243586352817 27.429625242919403 27.219622138150708 22.258316755401722 28 18.85715764175569 27.436668468199123 29.466123523797478 24.240050366247715 29 20.65246139162632 25.854098869634214 27.66966985959546 25.823769879144002 30 23.149500362223012 25.509987005968053 26.5522406080747 24.78827202373423 31 20.624863447673146 30.854932557524467 25.057495716569118 23.462708278233272 32 22.03077745707945 31.65857893586928 23.22237618297437 23.088267424076907 33 23.93733541851132 28.089532329841425 23.372008785345493 24.60112346630176 34 20.48471763853593 25.75707484792383 27.937024941641848 25.821182571898394 35 22.829536699515888 25.21733380863126 24.92266826121454 27.03046123063832 36 27.21372882720237 24.75075606867288 24.983326242194956 23.052188861929785 37 21.857571610914984 29.247496061543416 28.7592136885802 20.135718638961396 38 18.832147005048125 32.98069293837609 25.036653519312814 23.150506537262974 39 21.20887618872394 25.004168439451263 28.527793429389508 25.259161942435288 40 22.58589860055426 22.154968204868737 30.98372296263928 24.275410231937723 41 21.101646677322538 24.69167921989812 27.070420753653853 27.13625334912549 42 26.31305842714718 24.261611259961132 25.194766739877878 24.23056357301381 43 27.332744960500442 22.755223485850305 26.45852259006704 23.453508963582212 44 21.41758563986983 23.436547727194323 27.17808148292952 27.967785150006325 45 22.67242965399078 20.780964318158297 26.468584340466634 30.078021687384286 46 23.55383898899532 21.943958925060084 30.13867966836471 24.36352241757989 47 18.93880155928383 24.24766854869312 32.594321723031634 24.21920816899141 48 19.60287708565712 23.430366937663145 30.614887940848405 26.351868035831334 49 23.02861561813645 19.970130975242345 32.91629773581868 24.084955670802525 50 22.336798408518565 19.876987914400377 29.50407069673309 28.282142980347963 51 19.779245196232882 18.980485953796443 26.908139093637523 34.33212975633315 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 253.0 1 460.5 2 668.0 3 1249.5 4 1831.0 5 1373.5 6 916.0 7 958.5 8 1001.0 9 1185.0 10 1369.0 11 1469.5 12 1570.0 13 1525.0 14 1480.0 15 1450.5 16 1421.0 17 1381.0 18 1341.0 19 1451.5 20 1562.0 21 1673.0 22 1784.0 23 1944.0 24 2104.0 25 2486.0 26 3588.0 27 4308.0 28 4773.5 29 5239.0 30 6382.5 31 7526.0 32 8895.5 33 10265.0 34 11622.0 35 12979.0 36 14230.0 37 15481.0 38 17815.5 39 20150.0 40 23994.0 41 27838.0 42 33780.5 43 39723.0 44 48794.5 45 57866.0 46 72993.0 47 88120.0 48 101136.5 49 114153.0 50 104666.0 51 95179.0 52 75369.0 53 55559.0 54 44755.5 55 33952.0 56 28345.0 57 22738.0 58 20824.5 59 18911.0 60 16822.5 61 14734.0 62 12688.5 63 10643.0 64 8821.5 65 7000.0 66 5906.0 67 4812.0 68 3999.0 69 3186.0 70 2648.5 71 2111.0 72 1770.5 73 1430.0 74 1099.5 75 568.5 76 368.0 77 297.5 78 227.0 79 175.5 80 124.0 81 106.0 82 88.0 83 67.0 84 46.0 85 28.0 86 10.0 87 5.0 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 695704.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.11024425913216 #Duplication Level Percentage of deduplicated Percentage of total 1 69.9230333834932 28.74552981734858 2 13.122251974749465 10.789179678236598 3 5.3623581670194485 6.613435621533652 4 2.919180661095545 4.80032920056691 5 1.831636281165563 3.764950745630238 6 1.2836707986534317 3.1663212048574696 7 0.9111682145791244 2.622084350375361 8 0.7381508702749267 2.427645006167457 9 0.6006645562467462 2.222411996259627 >10 3.12541439559963 21.052012397509905 >50 0.11146899618919355 3.1658693500540314 >100 0.06217247387460611 4.760524834772259 >500 0.00515038245115078 1.612804169330344 >1k 0.002943075686371874 2.551842155768089 >5k 7.357689215929685E-4 1.705059471589488 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 6062 0.871347584604947 No Hit CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT 5212 0.7491691868955763 No Hit TCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 3860 0.5548336648919655 No Hit GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 3384 0.486413762174718 No Hit CCTGTATCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 2095 0.301133815530743 No Hit CTGTCACTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT 1965 0.28244770764578037 No Hit TCTGTATCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 1666 0.23946965951036647 No Hit GCTGTATCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 1422 0.204397272403206 No Hit TCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 1373 0.19735404712348928 No Hit CGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 1108 0.15926313489645022 No Hit CTGTATCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT 975 0.14014580913721927 No Hit GCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 965 0.13870841622299138 No Hit CCTGACTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 959 0.13784598047445465 No Hit TCTGACTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 908 0.1305152766118924 No Hit TGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 827 0.11887239400664651 No Hit GCTGACTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 787 0.11312282234973495 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCC 770 0.11067925439554754 No Hit TTCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT 734 0.10550463990432714 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC 723 0.10392350769867645 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8053712498418868 0.0 2 0.0 0.0 0.0 2.8949093292549706 0.0 3 0.0 0.0 0.0 3.9350068419902717 0.0 4 0.0 0.0 0.0 5.0160700527810675 0.0 5 0.0 0.0 0.0 6.7468348608028705 0.0 6 0.0 0.0 0.0 7.994060692478411 0.0 7 0.0 0.0 0.0 9.617595989098811 0.0 8 0.0 0.0 0.0 12.189810609109621 0.0 9 0.0 0.0 0.0 13.330525625840874 0.0 10 0.0 0.0 0.0 15.49897657624507 0.0 11 0.0 0.0 0.0 19.41443487460184 0.0 12 0.0 0.0 0.0 22.934753860837368 0.0 13 0.0 0.0 0.0 24.097892207030576 0.0 14 0.0 0.0 0.0 24.495618826397433 0.0 15 0.0 0.0 0.0 25.114128997389695 0.0 16 0.0 0.0 0.0 26.497044720168347 0.0 17 0.0 0.0 0.0 28.432063061301932 0.0 18 0.0 0.0 0.0 30.690638547428218 0.0 19 0.0 0.0 0.0 32.03963179743109 0.0 20 0.0 0.0 0.0 33.43217805273507 0.0 21 0.0 0.0 0.0 35.204627255269486 0.0 22 0.0 0.0 0.0 36.94904729597645 0.0 23 0.0 0.0 0.0 38.56726423881421 0.0 24 0.0 0.0 0.0 39.815352506238284 0.0 25 0.0 0.0 0.0 40.8384887825857 0.0 26 0.0 0.0 0.0 41.7013557489967 0.0 27 1.43739291422789E-4 0.0 0.0 42.54984878626542 0.0 28 1.43739291422789E-4 0.0 0.0 43.455981279394685 0.0 29 1.43739291422789E-4 0.0 0.0 44.48199234157055 0.0 30 1.43739291422789E-4 0.0 0.0 45.55256258408748 0.0 31 1.43739291422789E-4 0.0 0.0 46.51475340087163 0.0 32 1.43739291422789E-4 0.0 0.0 47.434253648103216 0.0 33 1.43739291422789E-4 0.0 0.0 48.309338454285154 0.0 34 1.43739291422789E-4 0.0 0.0 49.162431148879406 0.0 35 1.43739291422789E-4 0.0 0.0 50.032628819152976 0.0 36 1.43739291422789E-4 0.0 0.0 50.846911905063074 0.0 37 1.43739291422789E-4 0.0 0.0 51.65530168002484 0.0 38 1.43739291422789E-4 0.0 0.0 52.439543254027576 0.0 39 1.43739291422789E-4 0.0 0.0 53.22694709244161 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCAA 25 3.8892118E-5 45.000004 30 AAACTCG 20 7.031364E-4 45.000004 12 CGGGTAC 60 0.0 45.000004 6 TAATACG 25 3.8892118E-5 45.000004 4 CTGTCGT 20 7.031364E-4 45.000004 31 ACGCCTA 20 7.031364E-4 45.000004 39 GACGTTA 20 7.031364E-4 45.000004 9 ATTACCG 30 2.1642609E-6 45.000004 19 CGTCTAT 20 7.031364E-4 45.000004 1 TAAGTGT 160 0.0 45.000004 25 GTAATCG 20 7.031364E-4 45.000004 35 ACGATGA 20 7.031364E-4 45.000004 29 TAACCGT 25 3.8892118E-5 45.000004 12 CCATCGT 20 7.031364E-4 45.000004 33 TCTCGAG 30 2.1642609E-6 45.000004 1 AACGCGA 25 3.8892118E-5 45.000004 27 GTCGTAA 20 7.031364E-4 45.000004 32 TTGCGAT 20 7.031364E-4 45.000004 1 GTATCCG 25 3.8892118E-5 45.000004 27 CGTAATC 20 7.031364E-4 45.000004 34 >>END_MODULE