SRR2934106.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934106.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1366920
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	3404	0.24902700962748367	TruSeq Adapter, Index 15 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGCT	2840	0.2077663652591227	TruSeq Adapter, Index 14 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	1948	0.14251016884675036	TruSeq Adapter, Index 15 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	1908	0.13958388201211483	No Hit
TCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	1716	0.12553770520586427	TruSeq Adapter, Index 15 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTC	1563	0.11434465806338337	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCG	1522	0.11134521405788195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCGA	25	3.8911945E-5	45.0	41
TATCGCG	25	3.8911945E-5	45.0	32
CGATAAT	20	7.033756E-4	45.0	10
TACGTCA	20	7.033756E-4	45.0	38
TAATACG	105	0.0	42.85714	4
CCGTTAG	75	0.0	42.000004	1
CGATAAC	70	0.0	41.785717	16
CGTTAGG	420	0.0	41.249996	2
TAGGGCG	665	0.0	40.93985	5
TCGTTAG	165	0.0	40.909092	1
GGCGATA	55	6.184564E-11	40.909092	8
TTACGGG	1375	0.0	40.581818	3
TTAGGGA	2870	0.0	40.452965	4
TTATGGG	3890	0.0	40.43059	3
CGTATGG	245	0.0	40.408165	2
TACCGAT	45	1.9286745E-8	40.000004	29
TATGGGA	2325	0.0	39.870968	4
TAGGGAT	1575	0.0	39.857143	5
CTATGGG	1860	0.0	39.67742	3
TAGGGCA	675	0.0	39.666668	5