SRR2934102.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934102.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	675375
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	9234	1.3672404219877845	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	7894	1.1688321302979827	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	5723	0.8473810845826393	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	3061	0.4532296872108088	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGGCATT	3060	0.45308162132148805	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	2830	0.4190264667777161	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	2591	0.3836387192300574	No Hit
GAATCAGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	2128	0.31508421247455115	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCT	1985	0.29391079030168427	No Hit
TCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	1914	0.2833981121599112	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTC	1864	0.2759948176938738	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTA	1497	0.22165463631315935	No Hit
GAACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	1235	0.18286137331112345	No Hit
GCTGTATCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	1222	0.18093651674995373	No Hit
GAATATGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	1149	0.17012770682953915	No Hit
CTGTCACTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	1133	0.16775865260040718	No Hit
CCTGTATCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	1086	0.16079955580233204	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	960	0.1421432537479178	No Hit
TCTGTATCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	841	0.12452341291874884	No Hit
TCCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTG	797	0.11800851378863594	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	777	0.11504719600222099	No Hit
GCTGACTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	759	0.11238200999444752	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGTA	30	2.1641663E-6	45.000004	4
GATAACG	30	2.1641663E-6	45.000004	17
CAACCGT	60	0.0	45.000004	31
AACGAAC	30	2.1641663E-6	45.000004	20
GGCATAA	30	2.1641663E-6	45.000004	8
ACCCGTC	30	2.1641663E-6	45.000004	39
CGATAAC	30	2.1641663E-6	45.000004	16
GGTAGTA	30	2.1641663E-6	45.000004	8
GTACGTG	30	2.1641663E-6	45.000004	23
AGGTACG	20	7.031219E-4	45.0	10
TCGTTAA	20	7.031219E-4	45.0	15
GTCGCAT	20	7.031219E-4	45.0	28
TCCGCAA	20	7.031219E-4	45.0	32
ATCTACA	20	7.031219E-4	45.0	39
CGTGCGT	20	7.031219E-4	45.0	11
GCGGTAT	20	7.031219E-4	45.0	43
TTCACGC	20	7.031219E-4	45.0	30
ATAGCGT	20	7.031219E-4	45.0	32
TCGGGTA	20	7.031219E-4	45.0	5
CGTCTCA	20	7.031219E-4	45.0	41

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content