SRR2934100.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934100.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	752357
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC	4288	0.569942194995195	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG	3510	0.46653383965324974	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	2578	0.3426564782410478	No Hit
CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	2535	0.3369411064162359	No Hit
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	2062	0.27407201634330514	TruSeq Adapter, Index 15 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	2055	0.27314160697647527	No Hit
TCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	1625	0.21598788872835636	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATAGAGCCT	1425	0.1894047639617894	No Hit
GAATCAGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	944	0.12547234889819595	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTC	917	0.12188362705470938	No Hit
CCTGTATCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	911	0.12108613331171239	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTATCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	878	0.11669991772522885	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT	852	0.11324411150557515	No Hit
CTGTCACTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	764	0.10154753660828571	TruSeq Adapter, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATACGG	125	0.0	45.000004	5
ACCGAAA	20	7.0317305E-4	45.0	17
ATCGTAC	20	7.0317305E-4	45.0	10
TAACCGG	20	7.0317305E-4	45.0	31
CCATACG	20	7.0317305E-4	45.0	2
CGTACTC	20	7.0317305E-4	45.0	12
GCGATAC	20	7.0317305E-4	45.0	9
ATACGAC	20	7.0317305E-4	45.0	28
CGGTAAG	20	7.0317305E-4	45.0	14
AATCGTC	20	7.0317305E-4	45.0	18
ACGGGTA	60	0.0	44.999996	5
TAATACG	130	0.0	43.26923	4
TTCTACG	120	0.0	43.124996	1
CTTTACG	105	0.0	42.857147	1
CCGATGA	310	0.0	42.82258	18
AGACACG	155	0.0	42.09677	24
AGGCACG	145	0.0	41.89655	10
GGCGATA	70	0.0	41.785713	8
TTGACGG	135	0.0	41.666664	2
AAACACG	130	0.0	41.53846	40