Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934099.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 814713 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 5725 | 0.7027014421029246 | No Hit |
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT | 5047 | 0.6194819525403424 | Illumina Single End Adapter 2 (95% over 21bp) |
TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 3706 | 0.4548841125647928 | No Hit |
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 3165 | 0.38848036056869106 | No Hit |
CCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 2017 | 0.2475718443181832 | No Hit |
CTGTCACTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT | 1808 | 0.22191863883355245 | Illumina Single End Adapter 2 (95% over 21bp) |
TCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 1649 | 0.20240256384763716 | No Hit |
GCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 1395 | 0.1712259409141624 | No Hit |
TCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG | 1349 | 0.16557978085534414 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG | 1029 | 0.12630214566356496 | No Hit |
CCTGACTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 919 | 0.11280045856639086 | No Hit |
CTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT | 843 | 0.10347202020834331 | Illumina Single End Adapter 2 (95% over 21bp) |
GCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG | 843 | 0.10347202020834331 | No Hit |
TCTGACTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 835 | 0.10249007932854884 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGATAC | 35 | 1.2113378E-7 | 45.000004 | 9 |
TCGCCGT | 20 | 7.032077E-4 | 45.0 | 25 |
AACCGGT | 20 | 7.032077E-4 | 45.0 | 28 |
GACACGC | 20 | 7.032077E-4 | 45.0 | 10 |
ATTCGGA | 20 | 7.032077E-4 | 45.0 | 12 |
ATTCGAA | 40 | 6.8102963E-9 | 45.0 | 42 |
CGATTCG | 55 | 1.8189894E-12 | 45.0 | 10 |
CGTTCAT | 95 | 0.0 | 45.0 | 17 |
AATATCG | 20 | 7.032077E-4 | 45.0 | 14 |
TATTGCG | 25 | 3.8898015E-5 | 45.0 | 1 |
GTTACGT | 20 | 7.032077E-4 | 45.0 | 45 |
ATATCGT | 20 | 7.032077E-4 | 45.0 | 15 |
CCGTAGA | 50 | 2.1827873E-11 | 45.0 | 41 |
TGATTCG | 25 | 3.8898015E-5 | 45.0 | 15 |
ACCGTTA | 25 | 3.8898015E-5 | 45.0 | 34 |
GCGTCGA | 25 | 3.8898015E-5 | 45.0 | 32 |
GGTAGTC | 20 | 7.032077E-4 | 45.0 | 8 |
CGGACTA | 20 | 7.032077E-4 | 45.0 | 34 |
CGCGCAT | 60 | 0.0 | 44.999996 | 36 |
GTCCCTA | 30 | 2.164721E-6 | 44.999996 | 24 |