SRR2934099.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934099.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	814713
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	5725	0.7027014421029246	No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	5047	0.6194819525403424	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	3706	0.4548841125647928	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	3165	0.38848036056869106	No Hit
CCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	2017	0.2475718443181832	No Hit
CTGTCACTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	1808	0.22191863883355245	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1649	0.20240256384763716	No Hit
GCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1395	0.1712259409141624	No Hit
TCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG	1349	0.16557978085534414	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG	1029	0.12630214566356496	No Hit
CCTGACTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	919	0.11280045856639086	No Hit
CTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	843	0.10347202020834331	Illumina Single End Adapter 2 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG	843	0.10347202020834331	No Hit
TCTGACTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	835	0.10249007932854884	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAC	35	1.2113378E-7	45.000004	9
TCGCCGT	20	7.032077E-4	45.0	25
AACCGGT	20	7.032077E-4	45.0	28
GACACGC	20	7.032077E-4	45.0	10
ATTCGGA	20	7.032077E-4	45.0	12
ATTCGAA	40	6.8102963E-9	45.0	42
CGATTCG	55	1.8189894E-12	45.0	10
CGTTCAT	95	0.0	45.0	17
AATATCG	20	7.032077E-4	45.0	14
TATTGCG	25	3.8898015E-5	45.0	1
GTTACGT	20	7.032077E-4	45.0	45
ATATCGT	20	7.032077E-4	45.0	15
CCGTAGA	50	2.1827873E-11	45.0	41
TGATTCG	25	3.8898015E-5	45.0	15
ACCGTTA	25	3.8898015E-5	45.0	34
GCGTCGA	25	3.8898015E-5	45.0	32
GGTAGTC	20	7.032077E-4	45.0	8
CGGACTA	20	7.032077E-4	45.0	34
CGCGCAT	60	0.0	44.999996	36
GTCCCTA	30	2.164721E-6	44.999996	24