FastQCFastQC Report
Sat 14 Jan 2017
SRR2934099.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934099.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences814713
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC57250.7027014421029246No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT50470.6194819525403424Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC37060.4548841125647928No Hit
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC31650.38848036056869106No Hit
CCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC20170.2475718443181832No Hit
CTGTCACTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT18080.22191863883355245Illumina Single End Adapter 2 (95% over 21bp)
TCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC16490.20240256384763716No Hit
GCTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC13950.1712259409141624No Hit
TCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG13490.16557978085534414No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG10290.12630214566356496No Hit
CCTGACTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC9190.11280045856639086No Hit
CTGTATCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT8430.10347202020834331Illumina Single End Adapter 2 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG8430.10347202020834331No Hit
TCTGACTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC8350.10249007932854884No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGATAC351.2113378E-745.0000049
TCGCCGT207.032077E-445.025
AACCGGT207.032077E-445.028
GACACGC207.032077E-445.010
ATTCGGA207.032077E-445.012
ATTCGAA406.8102963E-945.042
CGATTCG551.8189894E-1245.010
CGTTCAT950.045.017
AATATCG207.032077E-445.014
TATTGCG253.8898015E-545.01
GTTACGT207.032077E-445.045
ATATCGT207.032077E-445.015
CCGTAGA502.1827873E-1145.041
TGATTCG253.8898015E-545.015
ACCGTTA253.8898015E-545.034
GCGTCGA253.8898015E-545.032
GGTAGTC207.032077E-445.08
CGGACTA207.032077E-445.034
CGCGCAT600.044.99999636
GTCCCTA302.164721E-644.99999624