FastQCFastQC Report
Sat 14 Jan 2017
SRR2934097.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934097.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences283256
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT5760.2033496201316124No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGC4700.1659276414268365No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCG4690.16557460389188577No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC4080.1440393142598921No Hit
CCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC3750.1323890756065185Illumina PCR Primer Index 9 (95% over 24bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG3520.12426921230265203No Hit
GGTTCTGGAGGAGCTACTCTAGTATTAATAAATATTAGCCCACCAACAGCT3280.11579631146383484No Hit
GCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC3220.11367808625413053Illumina PCR Primer Index 9 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTC2880.1016748100658062Illumina PCR Primer Index 9 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGCT2840.10026265992600332Illumina PCR Primer Index 9 (96% over 25bp)

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCATAAG207.024278E-445.030
CGGGTTC207.024278E-445.06
CGGGTAC406.7830115E-945.06
GGTACCT406.7830115E-945.08
CCCTCGT207.024278E-445.014
CGCGGAA253.883339E-545.041
GCGCGAC207.024278E-445.09
GGCGTGA207.024278E-445.016
TCGGGTT207.024278E-445.05
CGCGACC207.024278E-445.010
TCGATCA207.024278E-445.017
ACGGGTA207.024278E-445.05
AGACGAG207.024278E-445.024
TATCTCG207.024278E-445.01
AGCATAA207.024278E-445.029
GCTAGTC253.883339E-545.027
CTCGATC207.024278E-445.016
GCGTGAT207.024278E-445.017
GGCGCAT207.024278E-445.018
GCTACGA700.045.010