Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934097.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 283256 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 576 | 0.2033496201316124 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGC | 470 | 0.1659276414268365 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCG | 469 | 0.16557460389188577 | No Hit |
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC | 408 | 0.1440393142598921 | No Hit |
CCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC | 375 | 0.1323890756065185 | Illumina PCR Primer Index 9 (95% over 24bp) |
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG | 352 | 0.12426921230265203 | No Hit |
GGTTCTGGAGGAGCTACTCTAGTATTAATAAATATTAGCCCACCAACAGCT | 328 | 0.11579631146383484 | No Hit |
GCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC | 322 | 0.11367808625413053 | Illumina PCR Primer Index 9 (95% over 24bp) |
GAATCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTC | 288 | 0.1016748100658062 | Illumina PCR Primer Index 9 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGCT | 284 | 0.10026265992600332 | Illumina PCR Primer Index 9 (96% over 25bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCATAAG | 20 | 7.024278E-4 | 45.0 | 30 |
CGGGTTC | 20 | 7.024278E-4 | 45.0 | 6 |
CGGGTAC | 40 | 6.7830115E-9 | 45.0 | 6 |
GGTACCT | 40 | 6.7830115E-9 | 45.0 | 8 |
CCCTCGT | 20 | 7.024278E-4 | 45.0 | 14 |
CGCGGAA | 25 | 3.883339E-5 | 45.0 | 41 |
GCGCGAC | 20 | 7.024278E-4 | 45.0 | 9 |
GGCGTGA | 20 | 7.024278E-4 | 45.0 | 16 |
TCGGGTT | 20 | 7.024278E-4 | 45.0 | 5 |
CGCGACC | 20 | 7.024278E-4 | 45.0 | 10 |
TCGATCA | 20 | 7.024278E-4 | 45.0 | 17 |
ACGGGTA | 20 | 7.024278E-4 | 45.0 | 5 |
AGACGAG | 20 | 7.024278E-4 | 45.0 | 24 |
TATCTCG | 20 | 7.024278E-4 | 45.0 | 1 |
AGCATAA | 20 | 7.024278E-4 | 45.0 | 29 |
GCTAGTC | 25 | 3.883339E-5 | 45.0 | 27 |
CTCGATC | 20 | 7.024278E-4 | 45.0 | 16 |
GCGTGAT | 20 | 7.024278E-4 | 45.0 | 17 |
GGCGCAT | 20 | 7.024278E-4 | 45.0 | 18 |
GCTACGA | 70 | 0.0 | 45.0 | 10 |