SRR2934097.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934097.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283256
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	576	0.2033496201316124	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGC	470	0.1659276414268365	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCG	469	0.16557460389188577	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	408	0.1440393142598921	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC	375	0.1323890756065185	Illumina PCR Primer Index 9 (95% over 24bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	352	0.12426921230265203	No Hit
GGTTCTGGAGGAGCTACTCTAGTATTAATAAATATTAGCCCACCAACAGCT	328	0.11579631146383484	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC	322	0.11367808625413053	Illumina PCR Primer Index 9 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTC	288	0.1016748100658062	Illumina PCR Primer Index 9 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGCT	284	0.10026265992600332	Illumina PCR Primer Index 9 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAG	20	7.024278E-4	45.0	30
CGGGTTC	20	7.024278E-4	45.0	6
CGGGTAC	40	6.7830115E-9	45.0	6
GGTACCT	40	6.7830115E-9	45.0	8
CCCTCGT	20	7.024278E-4	45.0	14
CGCGGAA	25	3.883339E-5	45.0	41
GCGCGAC	20	7.024278E-4	45.0	9
GGCGTGA	20	7.024278E-4	45.0	16
TCGGGTT	20	7.024278E-4	45.0	5
CGCGACC	20	7.024278E-4	45.0	10
TCGATCA	20	7.024278E-4	45.0	17
ACGGGTA	20	7.024278E-4	45.0	5
AGACGAG	20	7.024278E-4	45.0	24
TATCTCG	20	7.024278E-4	45.0	1
AGCATAA	20	7.024278E-4	45.0	29
GCTAGTC	25	3.883339E-5	45.0	27
CTCGATC	20	7.024278E-4	45.0	16
GCGTGAT	20	7.024278E-4	45.0	17
GGCGCAT	20	7.024278E-4	45.0	18
GCTACGA	70	0.0	45.0	10