SRR2934095.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934095.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	515086
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2101	0.40789305086917527	No Hit
CCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	1682	0.3265474115002155	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGCT	1329	0.25801516639939737	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCC	877	0.17026282989636682	No Hit
TCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	844	0.163856132762296	TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTG	779	0.15123688083155046	No Hit
GCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	660	0.1281339426814163	TruSeq Adapter, Index 13 (95% over 21bp)
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	632	0.12269795723432592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.0296554E-4	45.000004	15
GTTACGG	25	3.8877966E-5	45.000004	2
CGGGCTA	25	3.8877966E-5	45.000004	6
CGTAATA	20	7.0296554E-4	45.000004	40
TCGTTGA	75	0.0	42.0	24
CGTTGAT	75	0.0	42.0	25
GCTTGCG	70	0.0	41.785713	1
TACGAAT	60	3.6379788E-12	41.249996	12
GCTACGA	60	3.6379788E-12	41.249996	10
TTTACGG	55	6.002665E-11	40.909092	2
CGTTTTT	1430	0.0	40.751747	1
CTAGCGG	50	1.0786607E-9	40.500004	2
CCTTGCG	45	1.9246727E-8	40.0	1
TTTGGGC	1165	0.0	39.978542	4
TTATCGG	35	6.2415766E-6	38.571426	2
GGCGATT	550	0.0	38.454544	8
TCTCTCG	65	9.094947E-12	38.07692	1
CTACGAA	65	9.094947E-12	38.07692	11
CGAATAT	65	9.094947E-12	38.07692	14
TAGCGGG	125	0.0	37.800003	3