SRR2934088.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934088.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	683089
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGC	3621	0.5300919792296465	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCG	3036	0.44445160147506396	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTC	2098	0.30713420945147707	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1786	0.2614593413156997	No Hit
GCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC	1504	0.22017628742374715	Illumina PCR Primer Index 5 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACTGAACT	1498	0.21929792457498218	No Hit
CTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGCT	997	0.14595462670310896	Illumina PCR Primer Index 5 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC	986	0.14434429481370656	Illumina PCR Primer Index 5 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC	960	0.1405380558023918	Illumina PCR Primer Index 5 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACTGAACTCGTA	763	0.11169847560127596	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	708	0.10364681615426394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATA	30	2.1642027E-6	45.000004	14
CCGATCG	30	2.1642027E-6	45.000004	40
AATTCCG	30	2.1642027E-6	45.000004	11
CGATCGA	30	2.1642027E-6	45.000004	41
ACGAACG	30	2.1642027E-6	45.000004	21
ACCGGTA	40	6.8084773E-9	45.0	41
TATTGCG	20	7.031274E-4	45.0	1
CCGATGA	680	0.0	43.676468	18
CGAACAC	95	0.0	42.631577	34
CGATGAA	705	0.0	42.127663	19
CGTTTTT	1430	0.0	40.751747	1
AACACGT	135	0.0	40.000004	41
TTTACGG	85	0.0	39.705883	2
CCGGGAT	210	0.0	39.64286	5
TACGGCT	460	0.0	39.619564	7
TTTCGCG	245	0.0	39.489796	1
TTTAGCG	40	3.4554796E-7	39.375	1
TTTGTCG	200	0.0	39.375	1
CGCTCGA	80	0.0	39.375	41
GGGCGTA	40	3.4554796E-7	39.375	7