##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934088.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 683089 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.934229653822563 31.0 30.0 31.0 26.0 34.0 2 30.123224060115152 31.0 30.0 33.0 26.0 34.0 3 30.15797795016462 31.0 30.0 33.0 25.0 34.0 4 33.92434221602163 35.0 33.0 37.0 28.0 37.0 5 34.40228725685819 35.0 35.0 37.0 32.0 37.0 6 33.8535754491728 35.0 35.0 37.0 29.0 37.0 7 34.38262656842666 35.0 35.0 37.0 32.0 37.0 8 34.43891059583744 35.0 35.0 37.0 31.0 37.0 9 35.87958816493897 37.0 35.0 39.0 31.0 39.0 10 35.22851048692044 37.0 34.0 39.0 30.0 39.0 11 35.3765644008321 37.0 35.0 39.0 30.0 39.0 12 35.431159043697086 37.0 35.0 39.0 30.0 39.0 13 35.453629029306576 37.0 35.0 39.0 30.0 39.0 14 36.123871120747076 38.0 35.0 40.0 29.0 41.0 15 36.36398917271395 38.0 35.0 40.0 30.0 41.0 16 36.51722396349524 38.0 35.0 40.0 31.0 41.0 17 36.24176351837023 38.0 35.0 40.0 30.0 41.0 18 36.3630786032274 38.0 35.0 40.0 30.0 41.0 19 36.32709793306582 38.0 35.0 40.0 30.0 41.0 20 36.25750817243434 38.0 34.0 40.0 30.0 41.0 21 35.991725821964636 38.0 34.0 40.0 29.0 41.0 22 36.20077471603261 38.0 34.0 40.0 30.0 41.0 23 36.19760821796282 38.0 34.0 40.0 30.0 41.0 24 36.13013970361109 38.0 34.0 40.0 30.0 41.0 25 35.70815369593128 38.0 34.0 40.0 29.0 41.0 26 35.79918282976303 38.0 34.0 40.0 29.0 41.0 27 35.824059529578136 38.0 34.0 40.0 29.0 41.0 28 35.73162647912644 38.0 34.0 40.0 29.0 41.0 29 35.858896864098234 38.0 34.0 40.0 29.0 41.0 30 35.38915866014531 38.0 34.0 40.0 27.0 41.0 31 35.54359534409133 38.0 34.0 40.0 28.0 41.0 32 35.497110918196604 38.0 34.0 40.0 28.0 41.0 33 35.49316121325332 38.0 34.0 40.0 27.0 41.0 34 35.43324954727715 38.0 34.0 40.0 27.0 41.0 35 35.36701806060411 38.0 34.0 40.0 27.0 41.0 36 35.15284684718975 38.0 34.0 40.0 26.0 41.0 37 35.18990204790298 38.0 34.0 40.0 27.0 41.0 38 35.177363418236865 38.0 34.0 40.0 27.0 41.0 39 35.045963263937786 38.0 34.0 40.0 26.0 41.0 40 34.92759069462398 37.0 33.0 40.0 26.0 41.0 41 34.78847558663659 37.0 33.0 40.0 25.0 41.0 42 34.97787550377769 37.0 33.0 40.0 26.0 41.0 43 35.01799472689503 37.0 34.0 40.0 27.0 41.0 44 35.02836087244854 37.0 34.0 40.0 27.0 41.0 45 35.070394926576185 37.0 34.0 40.0 27.0 41.0 46 34.95806988547612 37.0 34.0 40.0 27.0 41.0 47 34.86246155332614 37.0 33.0 40.0 26.0 41.0 48 34.83153878923537 37.0 33.0 40.0 26.0 41.0 49 34.8423719310368 37.0 33.0 40.0 27.0 41.0 50 34.652298602378316 37.0 33.0 40.0 26.0 41.0 51 33.578113540109705 36.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 9.0 10 9.0 11 11.0 12 17.0 13 10.0 14 28.0 15 33.0 16 92.0 17 215.0 18 384.0 19 750.0 20 1356.0 21 2303.0 22 3529.0 23 4683.0 24 6110.0 25 7520.0 26 9148.0 27 10615.0 28 13286.0 29 16847.0 30 21622.0 31 27581.0 32 34891.0 33 45248.0 34 59325.0 35 65126.0 36 79441.0 37 100678.0 38 117346.0 39 54876.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.41194778425652 4.688700886707296 52.55479154253692 15.344559786499271 2 20.715602212888804 6.821951458741101 51.41687247196193 21.04557385640817 3 21.860987367678298 6.934821084807396 50.2037069840094 21.0004845635049 4 18.753925183980417 4.850466044688174 49.74959339119793 26.64601538013348 5 20.37918924181183 5.683885994357983 50.08527439323427 23.851650370595927 6 20.996824718301717 8.766207624482316 52.26756689099078 17.969400766225192 7 82.42571612191091 2.2458274104838463 11.38855990947007 3.9398965581351773 8 84.33556974274215 4.99305361380435 6.610705193613131 4.060671449840358 9 79.62242109007758 4.45505636893582 8.282376088620955 7.640146452365651 10 41.420517677784304 24.961754617626696 17.6116142991616 16.006113405427406 11 30.42575711217718 26.13832165354734 23.942853713059353 19.493067521216123 12 24.61114144716135 22.153921377741405 30.085245114472634 23.149692060624606 13 23.889419973092817 23.59048381689648 31.944739265308037 20.575356944702666 14 20.770207103320356 26.327755241264317 31.887499286330183 21.01453836908514 15 18.970734413817233 24.603528969138722 34.248099442385985 22.17763717465806 16 22.486674503615195 23.988235793578873 29.77269433412044 23.752395368685487 17 22.87783875893185 25.515855181389245 28.122836116523615 23.483469943155285 18 24.151025708216643 23.692373907353215 29.128415184551354 23.028185199878788 19 24.535748635975693 25.828259567933316 26.395535574427342 23.24045622166365 20 26.435501084046148 26.5369519930785 28.584708581165852 18.4428383417095 21 25.313392544748925 28.030754411211422 27.45132771864281 19.204525325396837 22 24.28482964884517 23.28642387741568 29.90093531004013 22.52781116369902 23 23.496645385886758 26.705890447657627 28.23336344165987 21.564100724795743 24 23.00154152679958 26.372112565126944 28.350478488161862 22.275867419911606 25 22.301339942525793 28.253858574797718 25.995002115390527 23.449799367285962 26 21.097104476869045 26.602975600544 27.990642507784493 24.309277414802462 27 22.292409920230014 26.984038683099858 27.697854891529506 23.02569650514062 28 18.891828151236513 27.331284795978267 29.51328450611853 24.263602546666686 29 20.883369517002908 25.140647851158487 29.313456958024503 24.662525673814102 30 21.602602296333274 27.403456943385123 28.51766021704346 22.476280543238143 31 22.519759504252008 26.428181393639775 26.596241485370136 24.45581761673808 32 23.288326996921338 27.84132082349445 26.16716123374846 22.703190945835754 33 23.419642242811697 26.164818932818417 25.629895957920564 24.78564286644932 34 20.66041174722474 26.505916505755472 27.33494464118146 25.49872710583833 35 21.314060100513988 28.675619136013026 26.241822075893477 23.76849868757951 36 21.920423253778058 29.599656852913746 23.84125641021887 24.638663483089317 37 19.584710045103932 29.64503893343327 26.33580690071133 24.43444412075147 38 21.904173541075906 28.287382756858914 25.461982259998333 24.346461442066847 39 22.0697449380681 27.037179635450137 26.709989474285194 24.183085952196564 40 23.467805805685643 26.88756516354384 26.279298890774115 23.3653301399964 41 19.805179120143933 27.87030679750369 25.301827433906855 27.022686648445514 42 20.35679098916832 27.812334849485204 26.808805294771254 25.02206886657522 43 20.785724846981875 26.284715461674836 26.593020821591328 26.336538869751962 44 21.36193087577168 25.856513572901918 27.285756321650616 25.495799229675782 45 21.049526489227613 25.559334142403113 25.556259872432435 27.83487949593684 46 21.890851704536303 26.46287672616599 26.442674380644398 25.20359718865331 47 18.853180185890857 28.210233219975727 28.624966878400908 24.3116197157325 48 19.858466466302342 28.371998377956604 27.260722980460816 24.508812175280234 49 21.637883204092002 25.475304096537933 28.645169223922508 24.241643475447564 50 20.934900137463785 26.251484067229892 27.084172047859063 25.729443747447256 51 20.47419882328657 25.848022732030522 25.722709632273393 27.95506881240951 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 96.0 1 322.0 2 548.0 3 1717.5 4 2887.0 5 2048.0 6 1209.0 7 1192.5 8 1176.0 9 1290.5 10 1405.0 11 1504.0 12 1603.0 13 1638.5 14 1674.0 15 1667.0 16 1660.0 17 1662.0 18 1664.0 19 1710.5 20 1757.0 21 2056.0 22 2355.0 23 2496.0 24 2637.0 25 3143.5 26 4715.0 27 5780.0 28 6485.0 29 7190.0 30 8841.0 31 10492.0 32 12255.5 33 14019.0 34 16479.0 35 18939.0 36 20651.0 37 22363.0 38 24491.0 39 26619.0 40 29298.5 41 31978.0 42 34846.0 43 37714.0 44 40815.0 45 43916.0 46 54775.0 47 65634.0 48 65586.5 49 65539.0 50 63379.0 51 61219.0 52 56032.0 53 50845.0 54 46888.5 55 42932.0 56 40559.0 57 38186.0 58 35890.5 59 33595.0 60 29947.5 61 26300.0 62 22413.5 63 18527.0 64 16048.0 65 13569.0 66 10818.5 67 8068.0 68 7003.0 69 5938.0 70 4834.0 71 3730.0 72 3001.5 73 2273.0 74 1983.0 75 1301.0 76 909.0 77 699.0 78 489.0 79 353.0 80 217.0 81 146.0 82 75.0 83 45.0 84 15.0 85 9.0 86 3.0 87 1.5 88 0.0 89 1.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 683089.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.83196162300795 #Duplication Level Percentage of deduplicated Percentage of total 1 75.27168579755254 27.724038425945675 2 9.117662260945218 6.716427729733643 3 3.194143813763765 3.5293974710074574 4 1.7876519683995002 2.6337091478154004 5 1.2525623659479561 2.3067164496509576 6 0.9392899256834613 2.0757534297390734 7 0.7872918101018055 2.029825121504471 8 0.7092142903233746 2.089740281894348 9 0.6309875696506104 2.09164589549697 >10 6.17033011686386 40.845280768211914 >50 0.09117303849568902 2.307864041613627 >100 0.041552313899532504 2.5570455971328094 >500 0.0040342052329643205 1.0802325231655252 >1k 0.0024205231397785923 2.0123231170881306 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGC 3621 0.5300919792296465 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCG 3036 0.44445160147506396 No Hit GAATCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTC 2098 0.30713420945147707 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1786 0.2614593413156997 No Hit GCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC 1504 0.22017628742374715 Illumina PCR Primer Index 5 (95% over 23bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACTGAACT 1498 0.21929792457498218 No Hit CTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGCT 997 0.14595462670310896 Illumina PCR Primer Index 5 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC 986 0.14434429481370656 Illumina PCR Primer Index 5 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCCACTGAACTCGTATGCCGTCTTCTGC 960 0.1405380558023918 Illumina PCR Primer Index 5 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACTGAACTCGTA 763 0.11169847560127596 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 708 0.10364681615426394 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4639380812749144E-4 0.0 0.0 0.16527860937593783 0.0 2 1.4639380812749144E-4 0.0 0.0 0.7452908771770589 0.0 3 1.4639380812749144E-4 0.0 0.0 0.9979665900051091 0.0 4 1.4639380812749144E-4 0.0 0.0 1.4895569976972254 0.0 5 1.4639380812749144E-4 0.0 0.0 2.510068234153968 0.0 6 1.4639380812749144E-4 0.0 0.0 2.986872867225208 0.0 7 1.4639380812749144E-4 0.0 0.0 3.4898819919512682 0.0 8 1.4639380812749144E-4 0.0 0.0 4.218337581193666 0.0 9 1.4639380812749144E-4 0.0 0.0 4.492533183816457 0.0 10 1.4639380812749144E-4 0.0 0.0 5.55213156704324 0.0 11 1.4639380812749144E-4 0.0 0.0 6.637056079076079 0.0 12 1.4639380812749144E-4 0.0 0.0 8.18648814429745 0.0 13 1.4639380812749144E-4 0.0 0.0 8.573260585370281 0.0 14 1.4639380812749144E-4 0.0 0.0 8.728291628177294 0.0 15 1.4639380812749144E-4 0.0 0.0 9.033961899547498 0.0 16 1.4639380812749144E-4 0.0 0.0 9.48895385520774 0.0 17 1.4639380812749144E-4 0.0 0.0 10.127230858643603 0.0 18 1.4639380812749144E-4 0.0 0.0 10.805034190273888 0.0 19 1.4639380812749144E-4 0.0 0.0 11.558083939281705 0.0 20 1.4639380812749144E-4 0.0 0.0 12.09578839653398 0.0 21 1.4639380812749144E-4 0.0 0.0 12.8462030569955 0.0 22 1.4639380812749144E-4 0.0 0.0 13.67142495341017 0.0 23 1.4639380812749144E-4 0.0 0.0 14.524315279560936 0.0 24 1.4639380812749144E-4 0.0 0.0 15.17415739383887 0.0 25 1.4639380812749144E-4 0.0 0.0 15.759732626348836 0.0 26 1.4639380812749144E-4 0.0 0.0 16.268890291016252 0.0 27 1.4639380812749144E-4 0.0 0.0 16.80410605353036 0.0 28 1.4639380812749144E-4 0.0 0.0 17.354253984473473 0.0 29 2.927876162549829E-4 0.0 0.0 17.984186540846068 0.0 30 2.927876162549829E-4 0.0 0.0 18.71000704154217 0.0 31 2.927876162549829E-4 0.0 0.0 19.307147384894208 0.0 32 2.927876162549829E-4 0.0 0.0 19.89579688737485 0.0 33 2.927876162549829E-4 0.0 0.0 20.49586510688944 0.0 34 2.927876162549829E-4 0.0 0.0 21.124626512797015 0.0 35 2.927876162549829E-4 0.0 0.0 21.776225352772478 0.0 36 2.927876162549829E-4 0.0 0.0 22.41040332958077 0.0 37 2.927876162549829E-4 0.0 0.0 23.044727700197193 0.0 38 2.927876162549829E-4 0.0 0.0 23.695740964940146 0.0 39 2.927876162549829E-4 0.0 0.0 24.550241622980316 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGATA 30 2.1642027E-6 45.000004 14 CCGATCG 30 2.1642027E-6 45.000004 40 AATTCCG 30 2.1642027E-6 45.000004 11 CGATCGA 30 2.1642027E-6 45.000004 41 ACGAACG 30 2.1642027E-6 45.000004 21 ACCGGTA 40 6.8084773E-9 45.0 41 TATTGCG 20 7.031274E-4 45.0 1 CCGATGA 680 0.0 43.676468 18 CGAACAC 95 0.0 42.631577 34 CGATGAA 705 0.0 42.127663 19 CGTTTTT 1430 0.0 40.751747 1 AACACGT 135 0.0 40.000004 41 TTTACGG 85 0.0 39.705883 2 CCGGGAT 210 0.0 39.64286 5 TACGGCT 460 0.0 39.619564 7 TTTCGCG 245 0.0 39.489796 1 TTTAGCG 40 3.4554796E-7 39.375 1 TTTGTCG 200 0.0 39.375 1 CGCTCGA 80 0.0 39.375 41 GGGCGTA 40 3.4554796E-7 39.375 7 >>END_MODULE