SRR2934087.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934087.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	452452
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC	8541	1.8877140558556487	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCG	7107	1.5707743583849778	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC	4850	1.0719369126448772	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGTTCACT	3337	0.7375367994837022	No Hit
GCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	2427	0.5364104921627045	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGTTCACTCGTA	1692	0.3739623208649757	No Hit
TCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	1417	0.31318239282841054	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTC	1399	0.30920407026601715	No Hit
CCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	1364	0.30146844306136344	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCT	1359	0.3003633534606986	No Hit
CTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGCT	1320	0.291743654575513	TruSeq Adapter, Index 13 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCT	1068	0.23604713870200594	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGT	644	0.14233554056562905	No Hit
TCGCAGGGGAGGCTAGTATTTGGAGAAAGAAGATTAGAAAATGGAAGTGAA	606	0.1339368596005764	No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC	527	0.11647644391007224	No Hit
TGTTTTGGGATAAAAAAGATATTTATGAATGTACAGTTTGCTAAAGCCAAG	457	0.10100518950076473	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	30	2.1625729E-6	45.000004	1
CGAACAC	30	2.1625729E-6	45.000004	34
CCCCGCG	45	3.8380676E-10	45.000004	38
ACGGCGG	30	2.1625729E-6	45.000004	30
TAGGGCG	30	2.1625729E-6	45.000004	5
GTATACG	30	2.1625729E-6	45.000004	23
TATACGA	30	2.1625729E-6	45.000004	24
GCCCCGA	20	7.0287473E-4	45.0	24
TTCTACG	20	7.0287473E-4	45.0	1
AGCCGTA	25	3.8870436E-5	45.0	13
CGGCGAA	40	6.7993824E-9	45.0	31
TCGTTGT	25	3.8870436E-5	45.0	25
CTGTCGT	20	7.0287473E-4	45.0	42
CCGGCGA	25	3.8870436E-5	45.0	8
GCACGGG	20	7.0287473E-4	45.0	3
CCTCGTG	20	7.0287473E-4	45.0	1
CGCTGGA	20	7.0287473E-4	45.0	41
AGGCGAC	25	3.8870436E-5	45.0	31
TAGTTCG	20	7.0287473E-4	45.0	40
CTGCGCA	20	7.0287473E-4	45.0	1