SRR2934086.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934086.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	227725
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGC	1206	0.5295861236140081	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCG	1032	0.45317817543089256	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTC	740	0.32495334284773303	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	661	0.2902623778680426	TruSeq Adapter, Index 15 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGCT	575	0.2524975299154682	TruSeq Adapter, Index 14 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	530	0.23273685366121416	TruSeq Adapter, Index 15 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	528	0.23185860138324735	TruSeq Adapter, Index 15 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCAGTAT	508	0.22307607860357886	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTA	264	0.11592930069162367	No Hit
GGTTGGGAGAACTGTATGATTTTAATAATTGATGAATAACACTAGTATATT	252	0.11065978702382258	No Hit
CTTTTTGGGGCATAATGAAATGCAATTAAAAGATGAAATGGAGCAGAAATG	250	0.10978153474585574	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCCGAT	115	0.0	45.000004	8
ACCGATA	30	2.1578107E-6	45.000004	11
ACCTATG	30	2.1578107E-6	45.000004	34
GGTTGTA	30	2.1578107E-6	45.000004	9
TGGGCGC	30	2.1578107E-6	45.000004	6
GGCGATA	30	2.1578107E-6	45.000004	8
TATACTA	30	2.1578107E-6	45.000004	44
CGATCGA	30	2.1578107E-6	45.000004	41
GACCTAT	30	2.1578107E-6	45.000004	33
GTCATAT	25	3.8809252E-5	45.0	11
AGGTAAC	20	7.021362E-4	45.0	25
CGGCGAA	20	7.021362E-4	45.0	31
CTCACGT	20	7.021362E-4	45.0	2
GGTACAT	25	3.8809252E-5	45.0	8
AGTCACG	20	7.021362E-4	45.0	11
CCGATCG	20	7.021362E-4	45.0	40
CCGATAG	20	7.021362E-4	45.0	12
CCAGGTA	25	3.8809252E-5	45.0	37
AGCTTAA	25	3.8809252E-5	45.0	18
CGGCAAC	20	7.021362E-4	45.0	19