Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934085.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 319286 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC | 502 | 0.15722581008876055 | No Hit |
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT | 435 | 0.13624148882193393 | No Hit |
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC | 435 | 0.13624148882193393 | No Hit |
TCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC | 377 | 0.11807595697900942 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGC | 361 | 0.11306477578096126 | No Hit |
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC | 349 | 0.10930638988242516 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCCGCGA | 20 | 7.025624E-4 | 45.000004 | 32 |
GAGTCTA | 20 | 7.025624E-4 | 45.000004 | 9 |
CATTCGA | 20 | 7.025624E-4 | 45.000004 | 33 |
GTGGCGT | 40 | 6.7884685E-9 | 45.000004 | 34 |
ACGGGTA | 20 | 7.025624E-4 | 45.000004 | 5 |
TAATTCG | 20 | 7.025624E-4 | 45.000004 | 27 |
TACGAGT | 20 | 7.025624E-4 | 45.000004 | 39 |
ACGTGTA | 20 | 7.025624E-4 | 45.000004 | 25 |
GAACGGC | 20 | 7.025624E-4 | 45.000004 | 10 |
CCGAAGA | 20 | 7.025624E-4 | 45.000004 | 22 |
CGCGTCG | 20 | 7.025624E-4 | 45.000004 | 14 |
TAGTGGC | 20 | 7.025624E-4 | 45.000004 | 45 |
TTCGAGT | 20 | 7.025624E-4 | 45.000004 | 15 |
TCGTTCA | 25 | 3.8844562E-5 | 45.0 | 16 |
ACCGGTA | 25 | 3.8844562E-5 | 45.0 | 41 |
TCGCAGT | 25 | 3.8844562E-5 | 45.0 | 41 |
CACGCAA | 25 | 3.8844562E-5 | 45.0 | 24 |
TACGGTT | 35 | 1.2082455E-7 | 45.0 | 33 |
ATACTCG | 25 | 3.8844562E-5 | 45.0 | 44 |
GTTACCG | 25 | 3.8844562E-5 | 45.0 | 38 |