FastQCFastQC Report
Sat 14 Jan 2017
SRR2934085.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934085.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences319286
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC5020.15722581008876055No Hit
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT4350.13624148882193393No Hit
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC4350.13624148882193393No Hit
TCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC3770.11807595697900942No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGC3610.11306477578096126No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC3490.10930638988242516No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGCGA207.025624E-445.00000432
GAGTCTA207.025624E-445.0000049
CATTCGA207.025624E-445.00000433
GTGGCGT406.7884685E-945.00000434
ACGGGTA207.025624E-445.0000045
TAATTCG207.025624E-445.00000427
TACGAGT207.025624E-445.00000439
ACGTGTA207.025624E-445.00000425
GAACGGC207.025624E-445.00000410
CCGAAGA207.025624E-445.00000422
CGCGTCG207.025624E-445.00000414
TAGTGGC207.025624E-445.00000445
TTCGAGT207.025624E-445.00000415
TCGTTCA253.8844562E-545.016
ACCGGTA253.8844562E-545.041
TCGCAGT253.8844562E-545.041
CACGCAA253.8844562E-545.024
TACGGTT351.2082455E-745.033
ATACTCG253.8844562E-545.044
GTTACCG253.8844562E-545.038