##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934084.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 279948 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.95622044093903 31.0 30.0 31.0 26.0 34.0 2 30.078982525326133 31.0 30.0 33.0 26.0 34.0 3 30.144744738308543 31.0 30.0 33.0 25.0 34.0 4 33.97134825038936 35.0 33.0 37.0 28.0 37.0 5 34.45816008687328 35.0 35.0 37.0 32.0 37.0 6 33.90106376898567 35.0 35.0 37.0 30.0 37.0 7 34.509576778544584 35.0 35.0 37.0 32.0 37.0 8 34.377041450555105 35.0 35.0 37.0 31.0 37.0 9 35.89743095146241 37.0 35.0 39.0 31.0 39.0 10 35.34884335662337 37.0 34.0 39.0 30.0 39.0 11 35.48177161472845 37.0 35.0 39.0 30.0 39.0 12 35.48433280466372 37.0 35.0 39.0 30.0 39.0 13 35.44957277780159 37.0 35.0 39.0 30.0 39.0 14 36.17759726806407 38.0 35.0 40.0 30.0 41.0 15 36.36751825338992 38.0 35.0 40.0 30.0 41.0 16 36.5619114978496 38.0 35.0 40.0 31.0 41.0 17 36.26891779901982 38.0 35.0 40.0 30.0 41.0 18 36.43026204866618 38.0 35.0 40.0 30.0 41.0 19 36.40698629745524 38.0 35.0 40.0 30.0 41.0 20 36.390790432508894 38.0 35.0 40.0 30.0 41.0 21 36.14618071927644 38.0 34.0 40.0 30.0 41.0 22 36.352640490376785 38.0 35.0 40.0 30.0 41.0 23 36.421696172146255 38.0 35.0 40.0 30.0 41.0 24 36.331457985054364 38.0 35.0 40.0 30.0 41.0 25 35.93736336748253 38.0 34.0 40.0 29.0 41.0 26 36.02641562004372 38.0 34.0 40.0 30.0 41.0 27 36.0275586894709 38.0 34.0 40.0 30.0 41.0 28 35.93692400017146 38.0 34.0 40.0 30.0 41.0 29 36.09516052981268 38.0 34.0 40.0 30.0 41.0 30 35.59833611956506 38.0 34.0 40.0 29.0 41.0 31 35.74682083815566 38.0 34.0 40.0 29.0 41.0 32 35.72741366253733 38.0 34.0 40.0 29.0 41.0 33 35.743595239115834 38.0 34.0 40.0 29.0 41.0 34 35.73844071041765 38.0 34.0 40.0 29.0 41.0 35 35.7910040436081 38.0 34.0 40.0 29.0 41.0 36 35.575535456584795 38.0 34.0 40.0 29.0 41.0 37 35.62754511552146 38.0 34.0 40.0 29.0 41.0 38 35.45791004043608 38.0 34.0 40.0 29.0 41.0 39 35.482757512109394 38.0 34.0 40.0 29.0 41.0 40 35.34131338677183 38.0 34.0 40.0 28.0 41.0 41 35.27661565719348 37.0 34.0 40.0 27.0 41.0 42 35.52008230099876 38.0 34.0 40.0 29.0 41.0 43 35.54416534499264 38.0 34.0 40.0 29.0 41.0 44 35.49242002086102 38.0 34.0 40.0 29.0 41.0 45 35.576449912126535 38.0 34.0 40.0 29.0 41.0 46 35.42626844985497 37.0 34.0 40.0 29.0 41.0 47 35.341074056610516 37.0 34.0 40.0 28.0 41.0 48 35.3559732521754 37.0 34.0 40.0 28.0 41.0 49 35.40766856701959 37.0 34.0 40.0 29.0 41.0 50 35.242784374240934 37.0 34.0 40.0 28.0 41.0 51 34.089966708102935 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 5.0 11 1.0 12 5.0 13 3.0 14 10.0 15 5.0 16 11.0 17 35.0 18 77.0 19 202.0 20 381.0 21 573.0 22 870.0 23 1206.0 24 1649.0 25 2221.0 26 2849.0 27 3803.0 28 5106.0 29 6531.0 30 8550.0 31 11190.0 32 14672.0 33 18988.0 34 25820.0 35 28055.0 36 33828.0 37 42764.0 38 48991.0 39 21544.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.53814279794819 4.491548430422792 53.416705959678225 15.553602811950789 2 18.720976752825525 7.77823024275937 53.076642805092376 20.42415019932273 3 20.351636732536043 7.52711217797591 51.08841642019232 21.032834669295728 4 18.941374826753542 4.717661851486705 51.42455027362225 24.91641304813751 5 19.619715089945274 5.2238272822095535 50.80800720133739 24.34845042650778 6 19.943703830711417 8.81913783988455 52.701930358495154 18.53522797090888 7 78.1355823224313 1.9403603526369182 14.692371440410362 5.2316858845214105 8 78.73747981768042 5.57139182991127 8.656964864903482 7.034163487504823 9 73.39184419963708 4.949847828882507 11.822552759798247 9.83575521168217 10 38.70397359509623 24.493120150885165 19.966922428451 16.835983825567606 11 28.79534770743138 25.341491991369825 26.01447411662166 19.848686184577137 12 24.1094774743881 21.907997199479905 31.78304542272136 22.199479903410634 13 22.740294626144856 25.81122208410133 33.219026390615404 18.22945689913841 14 19.628645319845113 28.32097389515196 30.098804063611812 21.951576721391117 15 17.016374469544342 26.240230328489577 36.35960964179062 20.38378556017546 16 19.45361281380828 25.42222126966437 30.633546230014147 24.49061968651321 17 18.25124666009402 27.909468901367397 29.216140140311776 24.623144298226812 18 20.116950290768283 23.78298826925 33.31797333790561 22.782088102076102 19 21.02211839341592 27.18147655993256 28.758912369440036 23.037492677211482 20 23.512580907882892 26.77211482132396 31.362967408232954 18.35233686256019 21 23.389700944461115 29.484047037306926 28.21416834554989 18.91208367268207 22 20.37556974866761 26.08698758340835 29.461900067155327 24.075542600768713 23 20.39700230042722 27.069670081586576 27.970194464686298 24.563133153299898 24 22.1294669009959 25.037506965579322 28.84249932130253 23.99052681212225 25 19.135696629374028 27.599768528441 27.722291282666784 25.542243559518198 26 18.687041879206138 27.015374283795563 31.281166502350437 23.016417334647862 27 22.08231528712475 26.38561447125895 29.03932158829497 22.492748653321332 28 16.650235043650962 26.813551088059214 33.96130709988998 22.574906768399845 29 21.574363810421936 23.526512066526642 31.601583151156643 23.297540971894783 30 22.13446782973981 27.474030891451267 29.96949433466215 20.42200694414677 31 23.495434866475204 27.761941503422065 26.617800448654748 22.124823181447983 32 22.87782016660237 30.86216011545001 25.720490948318975 20.539528769628646 33 22.30199894266078 27.1514709874691 25.42257847886036 25.123951591009757 34 20.96282166688099 26.653878577450097 29.729806964150484 22.653492791518424 35 20.285910240473232 27.17826167716862 27.522968551302384 25.01285953105577 36 22.18233386200294 26.364896337891324 29.30544243931016 22.147327360795575 37 22.841384828611027 26.2555903239173 30.835012216554503 20.06801263091717 38 20.4977352936974 29.922342720791008 27.320073727978052 22.259848257533545 39 23.27217911897924 26.92928686756112 28.297398088216386 21.501135925243258 40 22.459885407289924 28.471716175861232 27.353294183205453 21.71510423364339 41 20.016574506694102 27.19290725420435 26.605655335990967 26.184862903110577 42 20.591681312243704 26.427765156386187 27.90268192664352 25.077871604726592 43 21.856916284452826 24.597068026919285 28.30847157329218 25.2375441153357 44 21.114635575178248 23.55151671024619 30.053795704916624 25.280052009658938 45 21.60901310243331 23.671896209296012 28.140583251175215 26.57850743709546 46 23.637604126480632 26.216654521554002 29.599782816808833 20.54595853515653 47 18.528083786989015 25.858016488776485 32.716075842656494 22.89782388157801 48 21.133210453369912 24.645291268378415 29.636218154800176 24.585280123451497 49 21.430765713632532 23.10107591409833 32.77251489562347 22.695643476645664 50 22.492034234929346 23.055710346207153 28.628888222098393 25.823367196765112 51 19.59006672667781 23.58259391029763 27.52046808693043 29.30687127609413 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 67.0 1 195.0 2 323.0 3 481.0 4 639.0 5 494.5 6 350.0 7 382.0 8 414.0 9 505.0 10 596.0 11 673.5 12 751.0 13 806.0 14 861.0 15 876.5 16 892.0 17 954.0 18 1016.0 19 982.0 20 948.0 21 1032.5 22 1117.0 23 1206.0 24 1295.0 25 1540.5 26 2367.5 27 2949.0 28 3320.0 29 3691.0 30 4370.5 31 5050.0 32 5548.0 33 6046.0 34 7217.5 35 8389.0 36 8461.0 37 8533.0 38 9787.5 39 11042.0 40 12711.5 41 14381.0 42 16016.0 43 17651.0 44 19521.5 45 21392.0 46 28181.0 47 34970.0 48 34916.5 49 34863.0 50 32598.0 51 30333.0 52 24293.0 53 18253.0 54 15727.0 55 13201.0 56 11595.0 57 9989.0 58 8866.0 59 7743.0 60 7151.0 61 6559.0 62 5730.0 63 4901.0 64 4233.0 65 3565.0 66 2807.5 67 2050.0 68 1662.0 69 1274.0 70 1045.0 71 816.0 72 700.5 73 585.0 74 464.0 75 261.5 76 180.0 77 124.5 78 69.0 79 49.5 80 30.0 81 34.5 82 39.0 83 20.5 84 2.0 85 2.5 86 3.0 87 2.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 279948.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.968653059991176 #Duplication Level Percentage of deduplicated Percentage of total 1 70.6357716036972 26.819451056455556 2 12.419988712762816 9.431404848877955 3 4.390435817992188 5.000968030665119 4 2.30304543305698 3.497741321165504 5 1.5143488954639306 2.8748893911825415 6 1.20221720173237 2.738794070119787 7 0.9968517964663822 2.6494384008582705 8 0.8543004576650162 2.5949310148859746 9 0.7685711436954004 2.626344999620215 >10 4.751982439331946 29.16117116762495 >50 0.0917101707269386 2.3844895024720927 >100 0.060807830590687555 4.184968322037131 >500 0.0019936993636291 0.4454831975253417 >1k 0.0079747974545164 5.589924676509576 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC 3179 1.1355680340634688 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGC 2249 0.8033634817894751 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCG 2114 0.7551402403303471 No Hit CTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGCT 1905 0.6804835183676969 TruSeq Adapter, Index 14 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC 1505 0.5375998399702802 TruSeq Adapter, Index 15 (95% over 22bp) GAATCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTC 1425 0.5090231042907969 No Hit TCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC 1232 0.44008172946404334 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTGAGACT 1160 0.4143626673525083 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCC 640 0.22861388543586666 No Hit TTCTTTGGGGATACTTTTGGGATCCACTTGACGACCTGAAAAATGACGAAA 537 0.19182133824853187 No Hit CGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTG 494 0.17646134282080958 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCT 453 0.16181576578507437 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTGAGACTCGTA 452 0.16145855658908084 No Hit TTCCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCT 411 0.14681297955334563 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTC 410 0.14645577035735208 No Hit GAACTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCT 342 0.12216554502979125 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 329 0.1175218254818752 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTC 310 0.11073485075799791 No Hit AGCTTTGGGACAAGAAATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCAT 305 0.1089488047780302 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7304928058067927 0.0 2 0.0 0.0 0.0 3.1105776787117607 0.0 3 0.0 0.0 0.0 3.853215597182334 0.0 4 0.0 0.0 0.0 5.055938960092589 0.0 5 0.0 0.0 0.0 7.139540200322917 0.0 6 0.0 0.0 0.0 8.000414362667353 0.0 7 0.0 0.0 0.0 9.002028948233244 0.0 8 0.0 0.0 0.0 10.388715047080172 0.0 9 0.0 0.0 0.0 10.85844513981168 0.0 10 0.0 0.0 0.0 12.723791561289953 0.0 11 0.0 0.0 0.0 14.76488490719705 0.0 12 0.0 0.0 0.0 17.379656221869777 0.0 13 0.0 0.0 0.0 17.97619557917899 0.0 14 0.0 0.0 0.0 18.20909597496678 0.0 15 0.0 0.0 0.0 18.69347164473402 0.0 16 0.0 0.0 0.0 19.530770000142883 0.0 17 0.0 0.0 0.0 20.792790089588067 0.0 18 0.0 0.0 0.0 22.19126409190278 0.0 19 0.0 0.0 0.0 23.564376241301957 0.0 20 0.0 0.0 0.0 24.542415019932275 0.0 21 0.0 0.0 0.0 25.846943003700687 0.0 22 0.0 0.0 0.0 27.138611456413333 0.0 23 0.0 0.0 0.0 28.497078028776773 0.0 24 0.0 0.0 0.0 29.562633060425508 0.0 25 0.0 0.0 0.0 30.441010473373627 0.0 26 0.0 0.0 0.0 31.26759255290268 0.0 27 0.0 0.0 0.0 32.03237744152486 0.0 28 0.0 0.0 0.0 32.87360509808965 0.0 29 0.0 0.0 0.0 33.715547173046424 0.0 30 0.0 0.0 0.0 34.66643805278123 0.0 31 0.0 0.0 0.0 35.56267592552903 0.0 32 0.0 0.0 0.0 36.40390358209382 0.0 33 0.0 0.0 0.0 37.222984268507005 0.0 34 0.0 0.0 0.0 38.009201708888796 0.0 35 0.0 0.0 0.0 38.875434009173134 0.0 36 0.0 0.0 0.0 39.66129424035893 0.0 37 0.0 0.0 0.0 40.46180004858045 0.0 38 0.0 0.0 0.0 41.31338677182905 0.0 39 0.0 0.0 0.0 42.1681883778416 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCATA 20 7.024132E-4 45.000004 43 TAGCGCG 20 7.024132E-4 45.000004 1 ATATCAC 20 7.024132E-4 45.000004 30 GTTCGCA 20 7.024132E-4 45.000004 41 AAGTTCG 20 7.024132E-4 45.000004 39 CATAGCG 20 7.024132E-4 45.000004 19 CTACGGC 20 7.024132E-4 45.000004 6 TCGCTAG 20 7.024132E-4 45.000004 1 TAGGGTC 20 7.024132E-4 45.000004 5 CAAGCTA 20 7.024132E-4 45.000004 41 CGTAAGT 20 7.024132E-4 45.000004 36 TGGATAC 20 7.024132E-4 45.000004 15 CACGTAA 20 7.024132E-4 45.000004 34 TAGTAGG 20 7.024132E-4 45.000004 10 GTTGCGA 20 7.024132E-4 45.000004 1 GTGGGAC 35 1.2075361E-7 45.0 5 GATCCAC 75 0.0 45.0 21 TAACGGG 75 0.0 45.0 3 TTCATCG 35 1.2075361E-7 45.0 15 CGCTAGG 30 2.1595988E-6 44.999996 2 >>END_MODULE