Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934082.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 556167 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC | 1787 | 0.32130637020894803 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG | 1697 | 0.30512418032713196 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC | 1191 | 0.21414431276936602 | No Hit |
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC | 1045 | 0.1878932047388644 | No Hit |
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC | 938 | 0.16865437899048308 | No Hit |
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT | 877 | 0.15768645029280773 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGTGTATT | 784 | 0.14096485408159778 | No Hit |
TCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC | 744 | 0.13377276968967955 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 711 | 0.12783930006634697 | No Hit |
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG | 639 | 0.11489354816089412 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTTTA | 20 | 7.030142E-4 | 45.000004 | 38 |
CGTATTA | 20 | 7.030142E-4 | 45.000004 | 27 |
GATCGAC | 20 | 7.030142E-4 | 45.000004 | 10 |
CGCATCG | 20 | 7.030142E-4 | 45.000004 | 21 |
TATGCGT | 20 | 7.030142E-4 | 45.000004 | 23 |
TATGCGG | 20 | 7.030142E-4 | 45.000004 | 2 |
TCGTAGA | 20 | 7.030142E-4 | 45.000004 | 19 |
TCGTAAT | 20 | 7.030142E-4 | 45.000004 | 32 |
TCGTAAA | 20 | 7.030142E-4 | 45.000004 | 14 |
CGTCGTA | 20 | 7.030142E-4 | 45.000004 | 30 |
TAACGAA | 35 | 1.2104101E-7 | 45.0 | 19 |
CTACGAA | 50 | 2.1827873E-11 | 45.0 | 11 |
ACGAACG | 35 | 1.2104101E-7 | 45.0 | 21 |
CGAACAC | 30 | 2.1634733E-6 | 44.999996 | 34 |
CCGATCG | 30 | 2.1634733E-6 | 44.999996 | 40 |
CCGATAT | 30 | 2.1634733E-6 | 44.999996 | 12 |
CGATCGA | 30 | 2.1634733E-6 | 44.999996 | 41 |
CCCGATC | 95 | 0.0 | 42.63158 | 41 |
CGGGTAC | 65 | 0.0 | 41.538464 | 6 |
TCGGGTC | 65 | 0.0 | 41.538464 | 5 |