FastQCFastQC Report
Sat 14 Jan 2017
SRR2934082.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934082.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556167
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC17870.32130637020894803No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG16970.30512418032713196No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC11910.21414431276936602No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC10450.1878932047388644No Hit
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC9380.16865437899048308No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT8770.15768645029280773No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGTGTATT7840.14096485408159778No Hit
TCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC7440.13377276968967955No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7110.12783930006634697No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG6390.11489354816089412No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTTA207.030142E-445.00000438
CGTATTA207.030142E-445.00000427
GATCGAC207.030142E-445.00000410
CGCATCG207.030142E-445.00000421
TATGCGT207.030142E-445.00000423
TATGCGG207.030142E-445.0000042
TCGTAGA207.030142E-445.00000419
TCGTAAT207.030142E-445.00000432
TCGTAAA207.030142E-445.00000414
CGTCGTA207.030142E-445.00000430
TAACGAA351.2104101E-745.019
CTACGAA502.1827873E-1145.011
ACGAACG351.2104101E-745.021
CGAACAC302.1634733E-644.99999634
CCGATCG302.1634733E-644.99999640
CCGATAT302.1634733E-644.99999612
CGATCGA302.1634733E-644.99999641
CCCGATC950.042.6315841
CGGGTAC650.041.5384646
TCGGGTC650.041.5384645