SRR2934080.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934080.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	568022
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC	10883	1.915946917548968	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10540	1.8555619324603625	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCG	7231	1.2730140733985655	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGC	6126	1.0784793546728824	No Hit
GAACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	3049	0.5367749840675186	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCTCATT	2647	0.4660030773455958	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTC	1944	0.3422402653418353	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	1550	0.2728767547735827	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	1549	0.27270070525437395	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	1483	0.2610814369865956	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	1386	0.24400463362334557	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	1319	0.23220931583635843	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTA	1292	0.22745597881772187	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC	1102	0.19400657016805686	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCC	868	0.1528109826732063	No Hit
CGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTG	785	0.138198872578879	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGT	706	0.12429096056138672	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGT	659	0.11601663315857484	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTC	614	0.10809440479418052	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	608	0.10703810767892794	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCCCCGATCGAATGC	575	0.10122847354503875	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGA	65	0.0	45.000004	4
ATCGTAA	20	7.0302683E-4	45.000004	14
CGTACAC	20	7.0302683E-4	45.000004	34
CGTAAGC	80	0.0	45.000004	43
ATACGTC	30	2.163555E-6	45.000004	28
CAATCGA	60	0.0	45.000004	41
TACGTCG	20	7.0302683E-4	45.000004	29
AGCGCGA	25	3.888306E-5	45.0	24
TGTCGCG	25	3.888306E-5	45.0	1
CGATCGA	230	0.0	44.021736	41
CGTTTTT	5975	0.0	43.832638	1
CCGATCA	155	0.0	43.548386	40
TACGGCT	790	0.0	42.72152	7
ATGAATG	3230	0.0	42.701237	21
ACCGAAT	95	0.0	42.63158	39
GATGAAT	3275	0.0	42.251907	20
TGAATGA	3205	0.0	42.19189	22
CGATGAA	3050	0.0	42.122948	19
ACCCGTC	75	0.0	42.0	39
CGCCCAC	70	0.0	41.785717	34

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content