##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934079.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 400294 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.939949137384023 31.0 30.0 31.0 26.0 34.0 2 30.21752262087366 31.0 30.0 33.0 26.0 34.0 3 30.22291116029718 31.0 30.0 33.0 26.0 34.0 4 33.96238015058932 35.0 33.0 37.0 28.0 37.0 5 34.38835705756269 35.0 35.0 37.0 32.0 37.0 6 33.89067785177894 35.0 35.0 37.0 30.0 37.0 7 34.476392351621556 35.0 35.0 37.0 32.0 37.0 8 34.68185883375719 35.0 35.0 37.0 32.0 37.0 9 35.99793152033256 37.0 35.0 39.0 31.0 39.0 10 35.094787830944256 37.0 34.0 39.0 30.0 39.0 11 35.28095100101425 37.0 34.0 39.0 30.0 39.0 12 35.37407755299854 37.0 34.0 39.0 30.0 39.0 13 35.432529590750796 37.0 35.0 39.0 30.0 39.0 14 36.05869685780951 38.0 34.0 40.0 29.0 41.0 15 36.301365995992946 38.0 35.0 40.0 30.0 41.0 16 36.464546058646896 38.0 35.0 40.0 31.0 41.0 17 36.227030632485125 38.0 35.0 40.0 30.0 41.0 18 36.36318056228672 38.0 35.0 40.0 30.0 41.0 19 36.36308313389659 38.0 35.0 40.0 30.0 41.0 20 36.39849460646425 38.0 35.0 40.0 30.0 41.0 21 36.09157269406986 38.0 34.0 40.0 30.0 41.0 22 36.3115085412222 38.0 35.0 40.0 30.0 41.0 23 36.31340214942018 38.0 35.0 40.0 30.0 41.0 24 36.217879858304144 38.0 34.0 40.0 30.0 41.0 25 35.67088439996603 38.0 34.0 40.0 29.0 41.0 26 35.80054160192259 38.0 34.0 40.0 29.0 41.0 27 35.84223845473577 38.0 34.0 40.0 29.0 41.0 28 35.737158188731286 38.0 34.0 40.0 29.0 41.0 29 35.925502255841955 38.0 34.0 40.0 30.0 41.0 30 35.47432137379026 38.0 34.0 40.0 27.0 41.0 31 35.583096424128264 38.0 34.0 40.0 29.0 41.0 32 35.655280868561604 38.0 34.0 40.0 29.0 41.0 33 35.66044207507482 38.0 34.0 40.0 29.0 41.0 34 35.65516845118837 38.0 34.0 40.0 29.0 41.0 35 35.73372820976582 38.0 34.0 40.0 29.0 41.0 36 35.55850699735694 38.0 34.0 40.0 28.0 41.0 37 35.61745367155141 38.0 34.0 40.0 29.0 41.0 38 35.5177394614958 38.0 34.0 40.0 28.0 41.0 39 35.46669198139367 38.0 34.0 40.0 28.0 41.0 40 35.403405996592504 38.0 34.0 40.0 28.0 41.0 41 35.299057692595945 38.0 34.0 40.0 27.0 41.0 42 35.53266599049699 38.0 34.0 40.0 28.0 41.0 43 35.51903351036988 38.0 34.0 40.0 28.0 41.0 44 35.45209521002064 38.0 34.0 40.0 28.0 41.0 45 35.540322862695916 38.0 34.0 40.0 28.0 41.0 46 35.428732381699454 38.0 34.0 40.0 28.0 41.0 47 35.39133486887138 38.0 34.0 40.0 28.0 41.0 48 35.3917695493812 38.0 34.0 40.0 28.0 41.0 49 35.45916751187877 38.0 34.0 40.0 28.0 41.0 50 35.30417143399601 37.0 34.0 40.0 28.0 41.0 51 34.14586029268488 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 1.0 12 8.0 13 4.0 14 8.0 15 16.0 16 25.0 17 71.0 18 153.0 19 280.0 20 462.0 21 824.0 22 1287.0 23 1827.0 24 2437.0 25 3466.0 26 4385.0 27 5752.0 28 7726.0 29 10065.0 30 12779.0 31 15992.0 32 20697.0 33 26885.0 34 35063.0 35 39181.0 36 48315.0 37 61328.0 38 71287.0 39 29965.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.069309057842485 5.0235576851014505 58.154006804998325 12.753126452057737 2 19.433716218579345 4.96585010017637 54.96984716233568 20.630586518908604 3 20.31831603771228 5.145967713730408 53.57162485573104 20.964091392826273 4 18.793936456704323 4.4277456069788705 49.96502570610601 26.813292230210795 5 17.980784123669103 5.451243336147931 52.588597380925016 23.979375159257945 6 20.37702288817719 7.0495685671031785 54.9633519363268 17.61005660839283 7 83.69098712446352 1.8658785792442554 9.929701669273085 4.5134326270191405 8 85.90311121325826 2.8973704327319423 6.09976667149645 5.099751682513352 9 81.28400625540228 4.50418942077573 8.057327864019944 6.154476459802045 10 37.9121345810829 26.615687469709766 18.734979789854457 16.737198159352875 11 27.637936116954037 27.7568487161936 24.24118273069294 20.364032436159423 12 22.91365846103114 23.116009732846358 31.49135385491664 22.478977951205863 13 22.683577570485696 25.95567258065322 32.39893678146562 18.961813067395465 14 20.817948807626394 28.628458083308768 30.40715074420301 20.146442364861826 15 18.247088390033326 27.0383767930571 33.986270091482766 20.72826472542681 16 20.29908017607059 26.25170499682733 30.285490164728923 23.163724662373156 17 20.80995468330777 27.185518643796808 28.225254437988077 23.779272234907342 18 21.315832862845806 26.01587832942787 30.57277900742954 22.09550980029678 19 21.445737383023477 29.143079836320307 27.87501186627829 21.536170914377934 20 23.636627079096865 27.856525453791463 29.021669073231177 19.4851783938805 21 22.569911115330232 29.043652915107398 28.853792462540035 19.53264350702234 22 21.71129220023283 26.183505123734058 28.29745137324067 23.80775130279245 23 20.062254243131296 28.40587168431203 26.907972640109517 24.623901432447152 24 21.526927708134522 27.607208701604318 27.849780411397624 23.016083178863536 25 19.789204934373235 29.476334893853018 26.388854192168754 24.34560597960499 26 19.29157069553878 29.127841036837925 27.67341004361794 23.907178224005357 27 20.04101985040995 28.352161161546263 29.277481051427202 22.329337936616586 28 17.463164574038082 26.947693445317693 30.288737777733367 25.30040420291086 29 18.494906243910727 24.858229201536872 31.42240453266849 25.224460021883914 30 19.63781620508926 26.351881367195112 31.004461720635334 23.005840707080296 31 19.668043987669062 27.279699420925617 27.58847247273254 25.463784118672777 32 18.271820212144075 28.921992335633313 29.004181926284183 23.802005525938437 33 19.315802884879613 26.592704362293713 28.38388784243581 25.707604910390863 34 17.511379136334792 26.530500082439406 28.16329997451873 27.794820806707072 35 17.233083683492634 25.376598200322764 29.649457648628257 27.740860467556345 36 19.249601542865992 26.255702058986646 28.768854891654634 25.72584150649273 37 16.816889586154176 26.848016707719825 30.998965760166282 25.336127945959717 38 17.769189645610474 27.8702653549641 29.36216880592764 24.99837619349778 39 18.044986934603067 25.73733306020075 31.314234037982082 24.903445967214097 40 19.301563350937062 24.63664206807996 30.56203690287639 25.499757678106594 41 17.38946874047575 24.80426886238615 28.9057542706111 28.900508126527 42 18.43844774091043 24.640389313854318 29.25899463894038 27.66216830629487 43 18.76345885773956 24.80476849515606 29.301213607998122 27.130559039106256 44 17.985031002213372 25.21621608118033 29.230765387440233 27.56798752916606 45 19.180652220617848 24.022593393855516 28.35565859093566 28.441095794590975 46 19.662298210815052 24.656127746106613 30.12560767835641 25.555966364721925 47 16.263796109859253 24.41105787246374 32.387195411372645 26.937950606304366 48 16.937550900088436 24.25542226463549 31.67696742893973 27.130059406336343 49 18.545618970057006 22.406531199568317 33.02697517324766 26.020874657127013 50 18.684267063708173 22.763268997286996 30.332455645100854 28.22000829390398 51 17.24882211574493 22.662343177764342 29.181051926833778 30.90778277965695 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 42.0 1 125.0 2 208.0 3 407.0 4 606.0 5 465.0 6 324.0 7 372.5 8 421.0 9 557.5 10 694.0 11 844.5 12 995.0 13 1005.5 14 1016.0 15 997.5 16 979.0 17 948.0 18 917.0 19 940.5 20 964.0 21 1059.5 22 1155.0 23 1501.0 24 1847.0 25 2149.5 26 2864.5 27 3277.0 28 3885.0 29 4493.0 30 5064.0 31 5635.0 32 7236.0 33 8837.0 34 9893.5 35 10950.0 36 12834.0 37 14718.0 38 15852.5 39 16987.0 40 19102.5 41 21218.0 42 24964.0 43 28710.0 44 30999.5 45 33289.0 46 39940.5 47 46592.0 48 48713.0 49 50834.0 50 47043.0 51 43252.0 52 36735.5 53 30219.0 54 25863.0 55 21507.0 56 17920.5 57 14334.0 58 12768.0 59 11202.0 60 9245.5 61 7289.0 62 6298.0 63 5307.0 64 4539.0 65 3771.0 66 3001.0 67 2231.0 68 1817.0 69 1403.0 70 1048.5 71 694.0 72 555.5 73 417.0 74 349.0 75 201.0 76 121.0 77 81.5 78 42.0 79 36.0 80 30.0 81 30.0 82 30.0 83 15.5 84 1.0 85 1.5 86 2.0 87 1.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 400294.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.21250757140731 #Duplication Level Percentage of deduplicated Percentage of total 1 75.29199741849155 32.535560085129454 2 10.764854925355554 9.303527499340563 3 3.65887174985546 4.743270695803122 4 1.9468807398547578 3.365183948464032 5 1.2688046985659096 2.7414116321708266 6 0.9315769547274836 2.415346572570597 7 0.7270599365228522 2.1992658108302465 8 0.6412974529865713 2.2169656834165146 9 0.5311131819773733 2.065565915772433 >10 4.102141667869674 30.044913706843563 >50 0.09046205792194086 2.700300124472488 >100 0.04027020642976722 3.1615730232919685 >500 0.0011672523602831077 0.3339121476418767 >1k 0.003501757080849323 2.173203154252305 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 1621 0.4049523600153887 RNA PCR Primer, Index 10 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 1608 0.401704747010947 RNA PCR Primer, Index 35 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 1573 0.39296117353744997 RNA PCR Primer, Index 35 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGCT 1459 0.3644821056523455 TruSeq Adapter, Index 10 (96% over 25bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGC 1268 0.3167671761255477 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCG 1088 0.27180022683327754 No Hit GAATCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTC 788 0.19685531134616055 RNA PCR Primer, Index 10 (95% over 21bp) TCTCCGGGGTAGAAATAATGAACTTCACTGGTCATGATAATGCATACCTAA 536 0.13390158233698232 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCTTCTCT 492 0.12290966139887183 No Hit TTCCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCT 443 0.11066865853597606 RNA PCR Primer, Index 35 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.39845713400650523 0.0 2 0.0 0.0 0.0 1.7512128585489666 0.0 3 0.0 0.0 0.0 2.3152982557820003 0.0 4 0.0 0.0 0.0 3.2616027219993304 0.0 5 0.0 0.0 0.0 4.8501851139412535 0.0 6 0.0 0.0 0.0 5.65934038481716 0.0 7 0.0 0.0 0.0 6.451757957900943 0.0 8 0.0 0.0 0.0 7.699840617146397 0.0 9 2.4981638495705656E-4 0.0 0.0 8.153257355843454 0.0 10 2.4981638495705656E-4 0.0 0.0 9.461046131093646 0.0 11 2.4981638495705656E-4 0.0 0.0 11.574992380600259 0.0 12 2.4981638495705656E-4 0.0 0.0 13.699430918275068 0.0 13 2.4981638495705656E-4 0.0 0.0 14.299989507711832 0.0 14 2.4981638495705656E-4 0.0 0.0 14.494846287978335 0.0 15 2.4981638495705656E-4 0.0 0.0 14.83309767321019 0.0 16 2.4981638495705656E-4 0.0 0.0 15.598035443948698 0.0 17 2.4981638495705656E-4 0.0 0.0 16.781415659490275 0.0 18 2.4981638495705656E-4 0.0 0.0 18.076463799107657 0.0 19 2.4981638495705656E-4 0.0 0.0 19.074480257011096 0.0 20 2.4981638495705656E-4 0.0 0.0 19.940343847272256 0.0 21 2.4981638495705656E-4 0.0 0.0 21.217405207172728 0.0 22 2.4981638495705656E-4 0.0 0.0 22.554172683077937 0.0 23 2.4981638495705656E-4 0.0 0.0 24.00710477798818 0.0 24 2.4981638495705656E-4 0.0 0.0 25.041844244480306 0.0 25 2.4981638495705656E-4 0.0 0.0 25.976657156989614 0.0 26 2.4981638495705656E-4 0.0 0.0 26.768824913688437 0.0 27 2.4981638495705656E-4 0.0 0.0 27.569486427475805 0.0 28 2.4981638495705656E-4 0.0 0.0 28.462330187312325 0.0 29 2.4981638495705656E-4 0.0 0.0 29.359420825693114 0.0 30 2.4981638495705656E-4 0.0 0.0 30.28598979749884 0.0 31 2.4981638495705656E-4 0.0 0.0 31.1803324556451 0.0 32 2.4981638495705656E-4 0.0 0.0 32.02920853172918 0.0 33 2.4981638495705656E-4 0.0 0.0 32.856350582321994 0.0 34 2.4981638495705656E-4 0.0 0.0 33.66100915826867 0.0 35 2.4981638495705656E-4 0.0 0.0 34.55310346895032 0.0 36 2.4981638495705656E-4 0.0 0.0 35.3595107595917 0.0 37 2.4981638495705656E-4 0.0 0.0 36.227123064547555 0.0 38 2.4981638495705656E-4 0.0 0.0 37.117468660534506 0.0 39 2.4981638495705656E-4 0.0 0.0 38.08225953923866 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGCGG 25 3.8862338E-5 45.000004 2 TCGACGG 35 1.2092823E-7 45.000004 2 GCCCGAC 35 1.2092823E-7 45.000004 9 TTTAGCG 20 7.0277706E-4 45.0 1 CGGGTCG 20 7.0277706E-4 45.0 6 ATCGTTC 20 7.0277706E-4 45.0 37 GTAGCGG 20 7.0277706E-4 45.0 2 TACGATA 20 7.0277706E-4 45.0 17 TCCGTTG 45 3.8380676E-10 45.0 1 TAAGGTT 20 7.0277706E-4 45.0 12 TTCGATG 20 7.0277706E-4 45.0 1 GACTAGA 20 7.0277706E-4 45.0 12 TTCAGCG 30 2.1619435E-6 44.999996 1 CGGGTGC 85 0.0 42.35294 6 TCTCCCG 55 6.002665E-11 40.909092 1 GCCGTTG 55 6.002665E-11 40.909092 1 TTGGGTC 375 0.0 40.8 5 GTTCGCG 50 1.0786607E-9 40.500004 1 GGCACCG 145 0.0 40.344826 8 GCACCGA 140 0.0 40.178574 9 >>END_MODULE