SRR2934077.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934077.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	498123
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	1276	0.25616163076188014	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	906	0.1818827879860998	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	753	0.15116748273016906	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	615	0.12346348191109426	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	585	0.11744087303738233	Illumina Single End Adapter 1 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	558	0.1120205250510416	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	511	0.10258510448222628	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	20	7.029432E-4	45.000004	37
CGTATTA	20	7.029432E-4	45.000004	35
CACGAAC	20	7.029432E-4	45.000004	43
TAACGCG	20	7.029432E-4	45.000004	34
ATTCCGG	30	2.1630149E-6	45.000004	2
ACGTATT	30	2.1630149E-6	45.000004	23
GCAATCA	30	2.1630149E-6	45.000004	9
GCTAACG	20	7.029432E-4	45.000004	32
CGATCAT	20	7.029432E-4	45.000004	10
CGCCCTA	20	7.029432E-4	45.000004	39
TTACTAG	25	3.8876122E-5	45.0	26
TCAGACG	85	0.0	42.352943	22
AAACACG	60	3.6379788E-12	41.250004	40
AGACACG	60	3.6379788E-12	41.250004	24
TATGACG	50	1.0786607E-9	40.5	19
TCGTTCA	95	0.0	40.263157	16
CTCGTAA	80	0.0	39.375004	33
TTTCGCG	190	0.0	39.078945	1
TTGGGAC	800	0.0	38.8125	5
TTCGGGC	290	0.0	38.793102	4