SRR2934071.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934071.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	417401
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGC	5505	1.3188756136185587	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCG	4466	1.0699543125196154	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTC	3129	0.7496388365145268	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACGAAGGT	2334	0.5591745108420919	No Hit
GCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	1780	0.4264484272917411	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTA	1210	0.2898890994511273	No Hit
TCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	1087	0.26042103396973176	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGCT	1055	0.25275454538920605	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	987	0.236463257155589	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTC	881	0.21106801373259768	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCT	858	0.20555772506534484	No Hit
GAACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCT	794	0.19022474790429347	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCC	480	0.11499732870788523	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	468	0.11212239549018808	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	426	0.10206012922824813	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAC	25	3.886522E-5	45.000004	9
GATAACG	25	3.886522E-5	45.000004	17
CCTAGCT	25	3.886522E-5	45.000004	11
ACCGCGT	25	3.886522E-5	45.000004	39
CGCGCTA	30	2.1621672E-6	45.000004	41
ATTCGGA	25	3.886522E-5	45.000004	25
TACGGAG	30	2.1621672E-6	45.000004	29
TGCGGAT	30	2.1621672E-6	45.000004	4
GCTTGCG	50	2.1827873E-11	45.000004	1
CCGTCAG	25	3.886522E-5	45.000004	30
CCCCGCG	25	3.886522E-5	45.000004	38
ACGGAGA	25	3.886522E-5	45.000004	30
CCGCGTA	25	3.886522E-5	45.000004	40
CGGTCGA	100	0.0	45.000004	41
ACCAACG	60	0.0	45.000004	36
TTACCGG	25	3.886522E-5	45.000004	2
GATTAAC	25	3.886522E-5	45.000004	14
CGATAAC	25	3.886522E-5	45.000004	16
CTAGCGG	25	3.886522E-5	45.000004	2
GCCCCTA	20	7.028119E-4	45.0	22