##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934069.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 920834 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.860459105549968 30.0 28.0 31.0 25.0 33.0 2 26.464876405519345 30.0 23.0 31.0 16.0 34.0 3 26.701984288156172 30.0 25.0 31.0 16.0 34.0 4 32.69803134984156 33.0 32.0 35.0 28.0 37.0 5 34.03562205565824 35.0 33.0 35.0 32.0 37.0 6 32.10190544658429 35.0 32.0 35.0 25.0 37.0 7 33.992028965046906 35.0 33.0 35.0 32.0 37.0 8 31.658225043818973 35.0 28.0 37.0 19.0 37.0 9 34.75366026884324 35.0 32.0 39.0 30.0 39.0 10 34.90728730694131 37.0 34.0 39.0 30.0 39.0 11 34.99902805500231 37.0 34.0 39.0 28.0 39.0 12 35.040417708294875 37.0 34.0 39.0 30.0 39.0 13 34.71590210613422 37.0 33.0 39.0 27.0 39.0 14 35.65960857222909 38.0 34.0 40.0 27.0 41.0 15 35.658734364717205 38.0 33.0 40.0 27.0 41.0 16 36.20423225032959 38.0 35.0 40.0 30.0 41.0 17 35.263398180345206 37.0 33.0 40.0 27.0 41.0 18 35.8255375018733 38.0 34.0 40.0 29.0 41.0 19 35.39183175252 37.0 34.0 40.0 27.0 41.0 20 34.29112087520661 36.0 31.0 40.0 25.0 41.0 21 35.03428631001896 37.0 33.0 40.0 27.0 41.0 22 35.08843070520854 37.0 33.0 40.0 27.0 41.0 23 34.06988881818004 36.0 31.0 40.0 24.0 41.0 24 34.45933034618618 37.0 32.0 40.0 24.0 41.0 25 35.090419120058556 37.0 33.0 39.0 27.0 41.0 26 34.767068765923064 37.0 33.0 40.0 27.0 41.0 27 33.76059528644685 36.0 31.0 39.0 23.0 41.0 28 33.52379147598807 36.0 31.0 39.0 23.0 41.0 29 33.7127071763206 36.0 31.0 40.0 23.0 41.0 30 33.635012390941256 36.0 31.0 39.0 23.0 40.0 31 34.0101125718642 37.0 32.0 40.0 24.0 40.0 32 32.50778533373008 36.0 30.0 40.0 16.0 40.0 33 31.69495479098296 35.0 27.0 39.0 12.0 41.0 34 31.686815430359868 36.0 28.0 39.0 12.0 41.0 35 30.86783611378381 35.0 26.0 39.0 12.0 41.0 36 30.903257264610126 35.0 26.0 39.0 10.0 41.0 37 30.101801193266105 35.0 24.0 39.0 7.0 41.0 38 31.330311435068644 35.0 25.0 39.0 12.0 40.0 39 30.98617991950775 35.0 27.0 39.0 11.0 40.0 40 31.07107144175823 35.0 26.0 39.0 13.0 40.0 41 31.572173703403653 35.0 27.0 39.0 17.0 40.0 42 29.921419061416064 35.0 23.0 39.0 7.0 40.0 43 30.33115849327892 35.0 26.0 39.0 7.0 40.0 44 30.506120538555265 35.0 26.0 39.0 8.0 41.0 45 29.867216023735004 35.0 23.0 39.0 7.0 40.0 46 29.96452129265427 35.0 23.0 39.0 7.0 40.0 47 29.956768538086127 35.0 23.0 39.0 8.0 40.0 48 29.392523516725056 35.0 22.0 39.0 7.0 40.0 49 29.391456006185695 35.0 22.0 39.0 7.0 40.0 50 29.40640875554117 35.0 22.0 39.0 7.0 40.0 51 28.67015987680733 34.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 6.0 11 19.0 12 14.0 13 21.0 14 32.0 15 57.0 16 163.0 17 437.0 18 1158.0 19 3032.0 20 7750.0 21 17971.0 22 30279.0 23 37810.0 24 40886.0 25 39157.0 26 33052.0 27 25832.0 28 22801.0 29 25268.0 30 30529.0 31 37556.0 32 45275.0 33 53876.0 34 65158.0 35 71112.0 36 80259.0 37 92145.0 38 104954.0 39 54221.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.47380961172154 2.809409730744086 32.578836142019085 14.137944515515283 2 14.630975832777679 40.090287717438756 32.008266419354634 13.270470030428939 3 12.56339361926254 40.04956376502171 34.21691640404242 13.170126211673331 4 11.86370181813443 3.0160702146097993 68.44719026447764 16.673037702778135 5 44.45155152828848 3.550477067527915 33.80848231060104 18.189489093582555 6 13.570632709044192 36.57260700625737 37.50838913419791 12.348371150500524 7 53.23771711296499 1.360180010729404 42.31348972779024 3.0886131485153676 8 51.9633288953275 32.74075457682927 10.374291131734928 4.92162539610831 9 49.14870649867403 2.9548213901745592 9.555576792342594 38.34089531880882 10 53.12455882384881 18.744855207344646 16.017544964673327 12.11304100413321 11 44.42103571327731 16.14579826548542 23.594806447198952 15.838359574038318 12 17.027064595790335 14.173238607610058 25.97949250353484 42.82020429306477 13 38.35718489977564 15.321545468564365 32.671469559117064 13.649800072542934 14 15.702070079949262 43.4067378050767 23.162698162752463 17.728493952221573 15 11.518254104431417 17.808312898958985 32.861080281570835 37.81235271503876 16 13.394705234602544 20.122410771105322 22.384490581364286 44.09839341292784 17 13.57573677774713 41.6158612735846 27.812721945540673 16.9956800031276 18 13.11745656654728 19.40067373706879 25.582461116770233 41.8994085796137 19 13.562162126941447 22.591259662436443 24.155385226870425 39.69119298375169 20 36.293620782898984 20.26803962494869 30.269082158130566 13.169257434021766 21 17.265978449970355 45.10248318372258 23.685702308993804 13.945836057313263 22 15.181889461075503 16.337146543242323 47.713811609910145 20.76715238577203 23 34.99240905526946 23.5003268775914 25.560415883861804 15.946848183277334 24 17.411064317781488 38.332316139499625 23.46850789610288 20.788111646616002 25 14.14978161101784 48.44553958693967 20.33091740748061 17.07376139456189 26 15.22836906543416 18.490520549849375 45.27015727047438 21.01095311424209 27 37.79063327374967 22.262210126906695 21.41102522278717 18.53613137655647 28 13.572370264347319 40.39816079771164 27.212939574342386 18.81652936359865 29 20.67951444017054 17.722303911454183 42.27689246921812 19.321289179157155 30 14.164550831094422 46.61600244995297 23.853159201332705 15.366287517619897 31 18.001615926431906 19.269705506095562 19.078574422751547 43.65010414472098 32 38.02835255865878 27.62452298677069 18.875714841111428 15.471409613459103 33 34.14882595560112 23.035422236798382 18.38843917579064 24.42731263180986 34 20.639442070992164 20.418229561462763 19.261886507231488 39.680441860313586 35 33.415577617681365 23.685919503406694 19.917270648129847 22.981232230782094 36 18.399407493641633 41.68015081980031 18.32371524074915 21.59672644580891 37 14.030541878340722 28.21811531720158 24.50843474502462 33.24290805943308 38 15.495083804464214 23.95784690834613 18.39853871599007 42.148530571199586 39 17.33884717549526 40.49014263157095 19.74199475692687 22.429015436006924 40 14.235030418077526 26.766713653057987 22.34539558704392 36.65286034182056 41 14.662034633821081 25.230497570680495 19.477560559232174 40.629907236266256 42 23.18257145153198 19.99372308146745 25.87132968591516 30.952375781085408 43 22.15708803106749 35.278019708221024 19.69855587434869 22.8663363863628 44 19.48223023910933 24.062317420946663 32.61195828998495 23.84349404995906 45 20.51509826961211 18.306774076543654 25.284144590664546 35.89398306317968 46 28.634259812300588 33.4577133337822 20.126428867743805 17.781597986173402 47 13.2749225158932 38.729999109502906 30.414711011973928 17.580367362629964 48 18.266158721333053 27.031256447959134 25.76533881242439 28.937246018283425 49 24.06720429523671 18.63636659810563 33.44283551649917 23.853593590158486 50 21.635821440129273 29.701335962833692 25.277520161071376 23.38532243596566 51 19.15795898066318 19.420221234228972 31.6883390491663 29.733480735941548 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 207.0 1 446.5 2 686.0 3 4980.5 4 9275.0 5 6484.0 6 3693.0 7 3589.0 8 3485.0 9 3516.5 10 3548.0 11 3625.0 12 3702.0 13 3732.5 14 3763.0 15 3478.0 16 3193.0 17 3030.0 18 2867.0 19 2896.0 20 2925.0 21 3023.5 22 3122.0 23 3565.5 24 4009.0 25 4438.5 26 5828.0 27 6788.0 28 7811.5 29 8835.0 30 10231.5 31 11628.0 32 12822.5 33 14017.0 34 16738.5 35 19460.0 36 20204.0 37 20948.0 38 22924.5 39 24901.0 40 26159.5 41 27418.0 42 30282.5 43 33147.0 44 37637.0 45 42127.0 46 99159.5 47 156192.0 48 123466.5 49 90741.0 50 88349.5 51 85958.0 52 85400.5 53 84843.0 54 81525.5 55 78208.0 56 66469.5 57 54731.0 58 46129.5 59 37528.0 60 31341.0 61 25154.0 62 20943.5 63 16733.0 64 14204.5 65 11676.0 66 9669.5 67 7663.0 68 6290.5 69 4918.0 70 4071.5 71 3225.0 72 2684.5 73 2144.0 74 1782.5 75 995.0 76 569.0 77 441.5 78 314.0 79 222.5 80 131.0 81 80.5 82 30.0 83 23.5 84 17.0 85 17.0 86 17.0 87 8.5 88 0.0 89 3.5 90 7.0 91 4.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 920834.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.543220050276513 #Duplication Level Percentage of deduplicated Percentage of total 1 73.28433685736796 21.650552900158115 2 7.687157322333952 4.542067606696127 3 3.445545959985019 3.05377567467536 4 2.4132090580310366 2.851758649149257 5 1.8911668220172853 2.793557878731939 6 1.6059547714667382 2.8467045122540027 7 1.4195957869652316 2.935760150173151 8 1.2712923898875013 3.00464566581507 9 1.110989244934558 2.9539979762932975 >10 5.6307584396483294 24.9565561958641 >50 0.1289683906314421 2.683333564307052 >100 0.08747420833346664 5.219231016831523 >500 0.012709927706571929 2.6983531482732146 >1k 0.00747642806268937 4.636224170773525 >5k 0.0018691070156723426 3.3762269920132795 >10k+ 0.001495285612537874 9.797253897990972 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGC 27490 2.9853372051857336 No Hit GAATCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTC 26287 2.8546947658318436 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCG 23552 2.557681406203507 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACAACCAT 11383 1.2361620009686871 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCAACCATCGAATGC 7576 0.8227324360308156 No Hit GAACTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCT 6024 0.6541895716274594 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCGACAACCAT 5829 0.6330131163705944 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5699 0.6188954795326845 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTC 5443 0.5910945946826464 No Hit GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC 4916 0.5338638668858882 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACAACCATCGTA 4682 0.5084521205776502 No Hit GAATGACTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCT 4333 0.4705516955281842 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCATCGAATGC 4030 0.4376467419752094 No Hit GAATGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTT 3018 0.3277463690524025 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGAACAACCATCGAATGC 2340 0.25411746308237965 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGACAACCATCGT 1871 0.2031853732594583 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGATGAATGAT 1787 0.19406320791803952 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGC 1677 0.18211751520903877 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCGACAACGAT 1467 0.15931210185549188 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGCCCACCCGACAACCAT 1418 0.15399083873966427 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCAACCATCGAATAC 1396 0.15160170019786412 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGACAACCATCGTATG 1327 0.14410849295312728 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGACCAACGAA 1196 0.12988225890877184 Illumina DpnII expression PCR Primer 2 (95% over 21bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGACAACCA 1171 0.12716732874763528 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGACAACCATCGTAT 1133 0.12304063490270777 No Hit GAATGATCCCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCG 1103 0.11978271870934393 No Hit GAATGCTACGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGC 1081 0.11739358016754377 No Hit CGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTG 1018 0.11055195616147971 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTT 1016 0.11033476174858876 No Hit GAATGATACGGCGACCACCGATGAATGATACGGAGACCACCCGACAACCAT 998 0.10838001203257047 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCT 958 0.104036123774752 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11120353940015247 0.0 2 0.0 0.0 0.0 0.8693206375959185 0.0 3 0.0 0.0 0.0 1.0810851901645682 0.0 4 0.0 0.0 0.0 2.0318537325945827 0.0 5 0.0 0.0 0.0 5.702982296483405 0.0 6 0.0 0.0 0.0 6.480212503013573 0.0 7 1.085972064454614E-4 0.0 0.0 7.364953943924746 0.0 8 1.085972064454614E-4 0.0 0.0 8.3626364795392 0.0 9 1.085972064454614E-4 0.0 0.0 8.603396486228789 0.0 10 1.085972064454614E-4 0.0 0.0 11.865222179024666 0.0 11 1.085972064454614E-4 0.0 0.0 12.280823688091447 0.0 12 1.085972064454614E-4 0.0 0.0 16.334866001906967 0.0 13 1.085972064454614E-4 0.0 0.0 16.651752650314823 0.0 14 1.085972064454614E-4 0.0 0.0 16.863408605677026 0.0 15 1.085972064454614E-4 0.0 0.0 17.570593614049873 0.0 16 1.085972064454614E-4 0.0 0.0 17.974683819233434 0.0 17 1.085972064454614E-4 0.0 0.0 18.262466416313906 0.0 18 1.085972064454614E-4 0.0 0.0 18.495516021345868 0.0 19 1.085972064454614E-4 0.0 0.0 20.28660974725086 0.0 20 1.085972064454614E-4 0.0 0.0 20.60946924201322 0.0 21 1.085972064454614E-4 0.0 0.0 20.832527904052196 0.0 22 1.085972064454614E-4 0.0 0.0 21.11618380728774 0.0 23 1.085972064454614E-4 0.0 0.0 21.38615646251116 0.0 24 1.085972064454614E-4 0.0 0.0 21.673178879146512 0.0 25 1.085972064454614E-4 0.0 0.0 21.868871045161235 0.0 26 1.085972064454614E-4 0.0 0.0 22.07401116813671 0.0 27 1.085972064454614E-4 0.0 0.0 22.34083450437321 0.0 28 1.085972064454614E-4 0.0 0.0 22.544237072045558 0.0 29 1.085972064454614E-4 0.0 0.0 22.795531007760356 0.0 30 1.085972064454614E-4 0.0 0.0 23.012182434619053 0.0 31 1.085972064454614E-4 0.0 0.0 23.23882480447073 0.0 32 1.085972064454614E-4 0.0 0.0 23.45699659221966 0.0 33 1.085972064454614E-4 0.0 0.0 23.66952132523343 0.0 34 1.085972064454614E-4 0.0 0.0 23.900290388930035 0.0 35 1.085972064454614E-4 0.0 0.0 24.13920424311005 0.0 36 1.085972064454614E-4 0.0 0.0 24.363783266039263 0.0 37 2.171944128909228E-4 0.0 0.0 24.584452789536442 0.0 38 2.171944128909228E-4 0.0 0.0 24.83238021185143 0.0 39 2.171944128909228E-4 0.0 0.0 25.0699908995541 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACATCG 70 0.0 45.000004 38 CGTAATC 125 0.0 45.000004 43 CGACGTC 110 0.0 45.0 45 TTCGTCG 50 2.1827873E-11 45.0 1 CGTAAGC 395 0.0 45.0 43 CGATCGA 150 0.0 45.0 41 CGTCAAT 145 0.0 45.0 42 CGACGTT 65 0.0 44.999996 45 TCGTAAT 60 0.0 44.999996 42 CGGTCAA 65 0.0 44.999996 41 CACCCGT 760 0.0 44.70395 38 ATCGAAT 2345 0.0 44.040512 43 CATCGAA 2865 0.0 43.979057 42 CGTTTTT 3220 0.0 43.951866 1 TCGACGA 210 0.0 43.92857 44 TCGAATG 2030 0.0 43.891624 44 ACGGACG 175 0.0 43.714287 43 TCGAATA 330 0.0 43.636364 44 GGCGAAA 610 0.0 43.524586 32 CCGTCAA 285 0.0 43.421055 41 >>END_MODULE