SRR2934066.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934066.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	423013
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC	2676	0.6326046717240369	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCG	2393	0.565703654497616	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC	1478	0.34939824544399345	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGGCGAT	1022	0.24160013994841767	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	858	0.20283064586667549	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	842	0.19904825620016406	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	691	0.16335195372246245	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	573	0.13545682993194064	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	532	0.1257644564115051	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTA	528	0.12481885899487723	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCGATA	30	2.1622363E-6	45.000004	8
CGATCGA	65	0.0	45.000004	41
ACAACGA	20	7.028227E-4	45.0	13
ACCGGTA	20	7.028227E-4	45.0	41
ATTCCGA	20	7.028227E-4	45.0	12
CCGGTAT	20	7.028227E-4	45.0	42
CGATAAC	20	7.028227E-4	45.0	16
TACCGGT	25	3.8866114E-5	45.0	40
CGTTCAT	85	0.0	42.352943	17
CCGATGA	405	0.0	41.666668	18
TCTTGCG	90	0.0	40.000004	1
GTTAGGG	135	0.0	40.0	3
CGTTTGG	295	0.0	39.661015	2
TTTGGGC	940	0.0	39.255318	4
CGATGAA	430	0.0	39.244186	19
TACGGCT	380	0.0	39.078945	7
TTGGGAC	760	0.0	39.078945	5
CCGATCG	75	0.0	39.0	40
ACACGCG	145	0.0	38.793106	36
TGCTACG	35	6.23893E-6	38.571426	4