SRR2934065.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934065.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	754871
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGC	8969	1.1881500282829782	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCG	7309	0.9682449054209263	No Hit
GAATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTC	4633	0.6137472495300522	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACACCTTGT	3007	0.3983462074977049	No Hit
GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	2228	0.295149767311236	TruSeq Adapter, Index 20 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACACCTTGTCGTA	1871	0.2478569185993368	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTC	1307	0.173142166012471	No Hit
GAACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCT	1248	0.16532626104327758	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCT	1212	0.1605572342824138	No Hit
CCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	1132	0.14995939703604988	TruSeq Adapter, Index 20 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCT	1016	0.13459253302882215	TruSeq Adapter, Index 22 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	979	0.1296910333023788	No Hit
TCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	908	0.12028545274623081	TruSeq Adapter, Index 20 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	809	0.10717062915385543	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAC	35	1.2111923E-7	45.000004	45
TCGTACG	30	2.1645083E-6	45.000004	30
CCGATCG	25	3.889529E-5	45.0	40
ATAGCCG	20	7.0317474E-4	45.0	23
TACGGGA	90	0.0	45.0	4
CGTAACA	20	7.0317474E-4	45.0	30
CGATCGA	25	3.889529E-5	45.0	41
CGGGATA	185	0.0	41.351353	6
ACCGGTC	60	3.6379788E-12	41.250004	39
TACGGCT	1195	0.0	40.857742	7
CGATGAA	1375	0.0	40.745457	19
ATGAATG	1525	0.0	39.836067	21
CGGTCGA	85	0.0	39.705883	41
CGTTCAT	165	0.0	39.545452	17
CGTAAGC	40	3.4561162E-7	39.375	43
CCGCGTA	40	3.4561162E-7	39.375	40
TTGGGAC	1445	0.0	39.083046	5
TGGGTAC	265	0.0	39.056602	6
TTTGGGC	1590	0.0	38.915092	4
GCGAACC	35	6.2454383E-6	38.57143	33