##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934060.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 672184 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.112980969496448 31.0 30.0 31.0 26.0 34.0 2 30.512489139878365 31.0 30.0 33.0 27.0 34.0 3 30.52138997655404 31.0 30.0 34.0 27.0 34.0 4 34.079476750413576 35.0 33.0 37.0 30.0 37.0 5 34.44096259357557 35.0 35.0 37.0 32.0 37.0 6 34.01265427323471 35.0 35.0 37.0 30.0 37.0 7 34.420762767337514 35.0 35.0 37.0 32.0 37.0 8 34.71312170477131 35.0 35.0 37.0 32.0 37.0 9 35.98329326493936 37.0 35.0 39.0 31.0 39.0 10 35.30735185603942 37.0 34.0 39.0 30.0 39.0 11 35.43114385346869 37.0 35.0 39.0 30.0 39.0 12 35.46178873641741 37.0 35.0 39.0 30.0 39.0 13 35.527574295133476 37.0 35.0 39.0 30.0 39.0 14 36.23291539221404 38.0 35.0 40.0 30.0 41.0 15 36.49992859098104 38.0 35.0 40.0 30.0 41.0 16 36.58614456755888 38.0 35.0 40.0 31.0 41.0 17 36.36072414695976 38.0 35.0 40.0 30.0 41.0 18 36.45668150387394 38.0 35.0 40.0 30.0 41.0 19 36.45149096080835 38.0 35.0 40.0 30.0 41.0 20 36.495691655856135 38.0 35.0 40.0 30.0 41.0 21 36.151596884186475 38.0 34.0 40.0 30.0 41.0 22 36.33280917129834 38.0 35.0 40.0 30.0 41.0 23 36.4165288075884 38.0 35.0 40.0 30.0 41.0 24 36.34214143746355 38.0 35.0 40.0 30.0 41.0 25 35.84346547969008 38.0 34.0 40.0 29.0 41.0 26 35.928985218333075 38.0 34.0 40.0 30.0 41.0 27 35.99519625578711 38.0 34.0 40.0 30.0 41.0 28 35.890564190757296 38.0 34.0 40.0 29.0 41.0 29 35.99300935458148 38.0 34.0 40.0 30.0 41.0 30 35.54891964105067 38.0 34.0 40.0 28.0 41.0 31 35.702182735679514 38.0 34.0 40.0 29.0 41.0 32 35.77006295895171 38.0 34.0 40.0 29.0 41.0 33 35.772446234959475 38.0 34.0 40.0 29.0 41.0 34 35.74079418730586 38.0 34.0 40.0 29.0 41.0 35 35.726080954024496 38.0 34.0 40.0 29.0 41.0 36 35.475499268057554 38.0 34.0 40.0 28.0 41.0 37 35.55617360722659 38.0 34.0 40.0 28.0 41.0 38 35.45297567332754 38.0 34.0 40.0 28.0 41.0 39 35.378795091820095 38.0 34.0 40.0 28.0 41.0 40 35.293656201278225 38.0 34.0 40.0 27.0 41.0 41 35.16888530521405 37.0 34.0 40.0 27.0 41.0 42 35.36700665294027 38.0 34.0 40.0 28.0 41.0 43 35.33153868583602 37.0 34.0 40.0 28.0 41.0 44 35.2414324054128 37.0 34.0 40.0 28.0 41.0 45 35.31979487759304 37.0 34.0 40.0 28.0 41.0 46 35.22134861883056 37.0 34.0 40.0 28.0 41.0 47 35.18231168846626 37.0 34.0 40.0 28.0 41.0 48 35.10836764933411 37.0 34.0 40.0 28.0 41.0 49 35.0916832295919 37.0 34.0 40.0 28.0 41.0 50 34.90750746819323 37.0 33.0 40.0 27.0 41.0 51 33.76834616712091 36.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 5.0 10 13.0 11 12.0 12 14.0 13 24.0 14 29.0 15 37.0 16 95.0 17 170.0 18 338.0 19 647.0 20 971.0 21 1495.0 22 2314.0 23 3422.0 24 4687.0 25 6109.0 26 8139.0 27 10337.0 28 12877.0 29 15881.0 30 20618.0 31 26057.0 32 33471.0 33 43726.0 34 59776.0 35 63430.0 36 78030.0 37 99008.0 38 119734.0 39 60717.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.151994096854434 4.504123870844888 54.49906573200195 17.844816300298728 2 20.72155838282375 3.612403746593195 54.42363995572641 21.242397914856646 3 21.828546945479214 3.8068445544672294 52.64689430275043 21.71771419730312 4 20.229728764742987 5.169715435059448 47.40636492388989 27.19419087630768 5 18.008164431167657 6.01888768551468 50.552229746616995 25.420718136700664 6 22.647816669245326 6.469805886483463 52.49262106804089 18.389756376230316 7 86.09978815324375 2.463016078930769 7.734043059638432 3.7031527081870443 8 88.01012817918902 2.4506682694024255 5.773716720421789 3.7654868309867537 9 82.21305475881604 5.048766409197482 7.752490389536199 4.985688442450281 10 40.939831950775385 26.832533949037764 16.26905728193471 15.958576818252146 11 30.19203075348417 25.763183890125323 23.824577794175404 20.22020756221511 12 26.970442616902513 22.168334860692905 29.964712043131048 20.896510479273534 13 24.463986051438297 22.752401128262502 31.382776144627066 21.40083667567214 14 20.901271080537473 24.953286600097595 31.820751460909513 22.324690858455423 15 19.69698772955024 24.32087047594111 34.24121966604382 21.740922128464828 16 23.02360663151756 23.20019518465182 32.05535984194804 21.72083834188258 17 23.329475262725683 24.029432417314307 28.673547719076918 23.96754460088309 18 23.967247063304097 23.525701296073695 29.988663818240248 22.518387822381968 19 25.12838746533687 24.97069254846887 27.530408340573416 22.37051164562084 20 27.389673065708198 25.843072730085808 27.1138557299787 19.653398474227295 21 27.263963438582294 25.414172309962744 27.41079823381693 19.911066017638028 22 25.47397736334099 23.560215655237258 28.003790628756413 22.96201635266534 23 24.138182402437426 25.0709627125906 28.048570034395343 22.742284850576628 24 23.737101745950515 24.511145757709198 29.19141187531985 22.560340621020437 25 24.031068873998787 25.583768729990595 26.974161836639965 23.41100055937065 26 22.833926424907467 26.88638825083608 26.82078121466741 23.458904109589042 27 22.078180974257048 26.345018625852447 28.83511062447187 22.741689775418635 28 21.05033740761458 26.108178712971448 29.096051081251563 23.74543279816241 29 22.394909727098533 25.066797186484653 28.972424217178627 23.565868869238184 30 22.711192173571522 24.509062994656226 29.07090915582638 23.70883567594587 31 23.365477309784225 25.61367125667972 27.97240041417231 23.048451019363743 32 24.357616366947145 25.74518286659605 27.316478821275126 22.580721945181676 33 23.939873606036443 25.5046237339776 27.23406091189317 23.321441748092784 34 22.18217035811623 24.894820465824832 28.926157123644717 23.99685205241422 35 22.78617164347857 25.09788986348976 28.5329612130012 23.582977280030466 36 23.70913321352487 26.485902669507162 27.150155314616235 22.654808802351738 37 22.66730538066958 26.77124120776454 28.22010044868667 22.341352962879213 38 22.319930257191483 26.330141746902637 27.948746176642107 23.401181819263773 39 22.593516061078514 25.234608381038527 28.260565559430155 23.911309998452804 40 23.645311402830178 23.899110957713958 29.229794223010362 23.2257834164455 41 21.243736833962128 24.68699046689597 29.178766528212513 24.890506170929388 42 22.115521940421075 24.88738202634993 28.643050117229805 24.35404591599919 43 22.364114587672425 24.34854147078776 28.79241398188591 24.494929959653906 44 22.27842376492151 24.367286338264524 28.50231484236459 24.851975054449376 45 22.063899170465227 23.924104114349642 27.864840579365175 26.147156135819955 46 21.87154112564417 24.914457946038585 28.60957713959273 24.604423788724517 47 20.84250740868572 25.3232745795794 29.986134748818777 23.848083262916106 48 21.35486711971722 24.73504278590386 29.845845780322055 24.064244314056864 49 22.317549956559514 23.804642776382657 29.70749080608881 24.170316460969023 50 20.88966711495662 23.95980862382919 29.595170370017733 25.555353891196457 51 20.761577187198743 23.86891089344584 28.782446472989538 26.587065446365877 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 122.0 1 397.5 2 673.0 3 1397.0 4 2121.0 5 1552.5 6 984.0 7 1067.0 8 1150.0 9 1232.5 10 1315.0 11 1356.0 12 1397.0 13 1399.0 14 1401.0 15 1433.5 16 1466.0 17 1386.0 18 1306.0 19 1491.5 20 1677.0 21 1920.0 22 2163.0 23 2416.5 24 2670.0 25 3636.0 26 5385.5 27 6169.0 28 7319.5 29 8470.0 30 9582.0 31 10694.0 32 13159.5 33 15625.0 34 17394.5 35 19164.0 36 21365.0 37 23566.0 38 24992.5 39 26419.0 40 29507.5 41 32596.0 42 34962.0 43 37328.0 44 40069.0 45 42810.0 46 46545.5 47 50281.0 48 53659.0 49 57037.0 50 56284.5 51 55532.0 52 50501.0 53 45470.0 54 43079.0 55 40688.0 56 38864.0 57 37040.0 58 35348.0 59 33656.0 60 31759.5 61 29863.0 62 26796.0 63 23729.0 64 20752.5 65 17776.0 66 14908.5 67 12041.0 68 10056.0 69 8071.0 70 6947.5 71 5824.0 72 4844.0 73 3864.0 74 3341.5 75 2069.0 76 1319.0 77 1048.5 78 778.0 79 553.0 80 328.0 81 235.0 82 142.0 83 86.5 84 31.0 85 17.5 86 4.0 87 3.0 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 672184.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.40589034561102 #Duplication Level Percentage of deduplicated Percentage of total 1 74.15784103511066 25.514665469212705 2 8.681366879921452 5.9738031384119346 3 3.018314372221217 3.1154337995767487 4 1.6514060031320605 2.272723754393818 5 1.2135162747575352 2.0876053940961063 6 0.9752777367668701 2.0133179320629973 7 0.8895479910462079 2.142398344596608 8 0.7794834112384683 2.1455056618634853 9 0.7423720307645232 2.298777361751948 >10 7.760782880682125 47.43239510932791 >50 0.0902317346162843 2.095690341525768 >100 0.0372315409683359 2.0343537977732176 >500 0.0013140543871177374 0.3324531059995346 >1k 0.0013140543871177374 0.5408767894072211 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 1434 0.2133344441402949 TruSeq Adapter, Index 23 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1120 0.16662104423788723 No Hit CTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGCT 1035 0.1539756971305476 TruSeq Adapter, Index 20 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 809 0.12035395070397392 TruSeq Adapter, Index 23 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 791 0.11767611249300786 TruSeq Adapter, Index 23 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16557966271140045 0.0 2 0.0 0.0 0.0 0.6682694024255263 0.0 3 0.0 0.0 0.0 0.9110600668864478 0.0 4 0.0 0.0 0.0 1.279560358473275 0.0 5 0.0 0.0 0.0 1.8768670483082013 0.0 6 0.0 0.0 0.0 2.3023457862728063 0.0 7 0.0 0.0 0.0 2.71056734465563 0.0 8 0.0 0.0 0.0 3.2828808778548733 0.0 9 0.0 0.0 0.0 3.5688144912702473 0.0 10 0.0 0.0 0.0 4.109440272306392 0.0 11 0.0 0.0 0.0 5.0986039536793495 0.0 12 1.487687894981136E-4 0.0 0.0 5.999398974090427 0.0 13 1.487687894981136E-4 0.0 0.0 6.305118836509051 0.0 14 1.487687894981136E-4 0.0 0.0 6.416546659843138 0.0 15 1.487687894981136E-4 0.0 0.0 6.585101698344501 0.0 16 1.487687894981136E-4 0.0 0.0 6.9835045166204495 0.0 17 1.487687894981136E-4 0.0 0.0 7.573819073348964 0.0 18 1.487687894981136E-4 0.0 0.0 8.212483486664366 0.0 19 1.487687894981136E-4 0.0 0.0 8.655070635421254 0.0 20 1.487687894981136E-4 0.0 0.0 9.146900253502018 0.0 21 1.487687894981136E-4 0.0 0.0 9.819037644454495 0.0 22 1.487687894981136E-4 0.0 0.0 10.524052937886054 0.0 23 1.487687894981136E-4 0.0 0.0 11.207199219261392 0.0 24 1.487687894981136E-4 0.0 0.0 11.76106542256287 0.0 25 2.975375789962272E-4 0.0 0.0 12.245010294800233 0.0 26 2.975375789962272E-4 0.0 0.0 12.697713721242993 0.0 27 2.975375789962272E-4 0.0 0.0 13.14744177189579 0.0 28 2.975375789962272E-4 0.0 0.0 13.609815169655928 0.0 29 2.975375789962272E-4 0.0 0.0 14.111612296633064 0.0 30 2.975375789962272E-4 0.0 0.0 14.69552979541316 0.0 31 2.975375789962272E-4 0.0 0.0 15.227080680289921 0.0 32 2.975375789962272E-4 0.0 0.0 15.735274865215477 0.0 33 2.975375789962272E-4 0.0 0.0 16.261470073670303 0.0 34 2.975375789962272E-4 0.0 0.0 16.786623900598645 0.0 35 2.975375789962272E-4 0.0 0.0 17.392856717803458 0.0 36 2.975375789962272E-4 0.0 0.0 17.921432226890257 0.0 37 2.975375789962272E-4 0.0 0.0 18.488390083667568 0.0 38 2.975375789962272E-4 0.0 0.0 19.050884876759934 0.0 39 2.975375789962272E-4 0.0 0.0 19.737006533925236 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAACGC 25 3.8890703E-5 45.000004 11 TCGTTAG 20 7.0311944E-4 45.0 1 ATGATCG 20 7.0311944E-4 45.0 27 TTGTTCG 95 0.0 42.63158 1 ACACGCG 155 0.0 40.645164 36 CGTTTTT 680 0.0 40.367645 1 TTTCGCG 290 0.0 40.344826 1 GTTCGCC 45 1.9263098E-8 40.0 28 TACGAAT 90 0.0 40.0 12 TTGGGCA 985 0.0 39.28934 5 GACCGAT 385 0.0 39.155846 9 TTTACGG 75 0.0 39.0 2 CGTTTGG 515 0.0 38.883495 2 CTGTTCG 110 0.0 38.863636 1 GATAACG 35 6.244418E-6 38.571426 17 CGTAGGG 140 0.0 38.571426 3 TTACGGG 140 0.0 38.571426 3 ACGAACG 35 6.244418E-6 38.571426 21 TTTGGGC 1660 0.0 38.22289 4 TTGGGTA 655 0.0 38.129772 5 >>END_MODULE