SRR2934056.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934056.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	520527
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGC	5431	1.0433656659500852	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCG	5354	1.028572965475374	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTC	3947	0.7582699840738328	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC	3065	0.5888263240907773	TruSeq Adapter, Index 21 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTGGTAT	2266	0.43532804254150126	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC	1766	0.3392715459524674	TruSeq Adapter, Index 21 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC	1513	0.2906669586784163	TruSeq Adapter, Index 21 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGCT	1485	0.2852877948694304	Illumina Paired End PCR Primer 2 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTA	1370	0.2631948006539526	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTC	1190	0.22861446188190046	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCT	1013	0.1946104620893825	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCT	962	0.18481269943730105	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	943	0.18116255256691777	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCC	901	0.17309380685343892	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTG	696	0.13371064325193507	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCG	90	0.0	45.000004	40
ATGGGCG	35	1.21021E-7	45.0	5
TCGTTGC	20	7.0297264E-4	45.0	1
CGCGGAA	20	7.0297264E-4	45.0	41
ACCGCAT	20	7.0297264E-4	45.0	22
CGCATCG	25	3.887855E-5	45.0	21
CGCGCGA	20	7.0297264E-4	45.0	41
CGATTCG	40	6.8030204E-9	45.0	10
TACGGAG	20	7.0297264E-4	45.0	29
CGGGCCA	35	1.21021E-7	45.0	6
CGAATAT	55	1.8189894E-12	45.0	14
TCGTAAC	50	2.1827873E-11	45.0	34
TATAGCG	70	0.0	45.0	1
CGTAACC	50	2.1827873E-11	45.0	35
GCTACGA	55	1.8189894E-12	45.0	10
CGATCGA	85	0.0	45.0	41
GATTACG	20	7.0297264E-4	45.0	11
TCGAAGG	20	7.0297264E-4	45.0	44
TCGAACG	25	3.887855E-5	45.0	12
GCATCGC	25	3.887855E-5	45.0	22