##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934056.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 520527 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.90428354340889 31.0 30.0 31.0 25.0 34.0 2 29.834648346771637 31.0 30.0 33.0 25.0 34.0 3 29.905876160122336 31.0 30.0 33.0 25.0 34.0 4 33.889973046547055 35.0 33.0 37.0 28.0 37.0 5 34.393191899747755 35.0 35.0 37.0 32.0 37.0 6 33.73102451938132 35.0 33.0 37.0 28.0 37.0 7 34.45094490775695 35.0 35.0 37.0 32.0 37.0 8 34.25045002468652 35.0 35.0 37.0 30.0 37.0 9 35.843266535645604 37.0 35.0 39.0 31.0 39.0 10 35.22710445375552 37.0 34.0 39.0 30.0 39.0 11 35.32143961792568 37.0 34.0 39.0 30.0 39.0 12 35.422965571430495 37.0 35.0 39.0 30.0 39.0 13 35.419980135516504 37.0 35.0 39.0 30.0 39.0 14 36.10835172815243 38.0 35.0 40.0 29.0 41.0 15 36.270573860721925 38.0 35.0 40.0 30.0 41.0 16 36.508866975200135 38.0 35.0 40.0 31.0 41.0 17 36.17931634670248 38.0 34.0 40.0 30.0 41.0 18 36.305029326048405 38.0 35.0 40.0 30.0 41.0 19 36.27774543875726 38.0 34.0 40.0 30.0 41.0 20 36.16871363060898 38.0 34.0 40.0 30.0 41.0 21 36.01203972128247 38.0 34.0 40.0 30.0 41.0 22 36.235711115849895 38.0 34.0 40.0 30.0 41.0 23 36.17665750287689 38.0 34.0 40.0 30.0 41.0 24 36.09431018948104 38.0 34.0 40.0 30.0 41.0 25 35.71638935156101 38.0 34.0 40.0 29.0 41.0 26 35.81059772115567 38.0 34.0 40.0 29.0 41.0 27 35.683290203966365 38.0 34.0 40.0 29.0 41.0 28 35.608106784086125 38.0 34.0 40.0 28.0 41.0 29 35.755282627029914 38.0 34.0 40.0 29.0 41.0 30 35.31059099720091 38.0 34.0 40.0 27.0 41.0 31 35.53971455851474 38.0 34.0 40.0 29.0 41.0 32 35.424640796731005 38.0 34.0 40.0 27.0 41.0 33 35.40832848248026 38.0 34.0 40.0 27.0 41.0 34 35.34886758996171 38.0 34.0 40.0 27.0 41.0 35 35.266841105264476 38.0 34.0 40.0 27.0 41.0 36 35.088773493017655 38.0 33.0 40.0 27.0 41.0 37 35.08724043133209 38.0 34.0 40.0 27.0 41.0 38 35.112059508920765 37.0 33.0 40.0 27.0 41.0 39 35.03350642714019 37.0 33.0 40.0 27.0 41.0 40 34.9244803823817 37.0 33.0 40.0 26.0 41.0 41 34.68665794473678 37.0 33.0 40.0 25.0 41.0 42 34.78385943476515 37.0 33.0 40.0 26.0 41.0 43 34.91491891871123 37.0 33.0 40.0 26.0 41.0 44 34.9967475270255 37.0 33.0 40.0 27.0 41.0 45 35.054781020004725 37.0 34.0 40.0 27.0 41.0 46 34.92248432838258 37.0 33.0 40.0 26.0 41.0 47 34.723816439877275 37.0 33.0 40.0 26.0 41.0 48 34.69702820410853 37.0 33.0 40.0 26.0 41.0 49 34.706866310489175 37.0 33.0 40.0 26.0 41.0 50 34.54750858264797 37.0 33.0 40.0 26.0 41.0 51 33.428413895917025 36.0 31.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 6.0 10 7.0 11 5.0 12 4.0 13 7.0 14 13.0 15 19.0 16 47.0 17 116.0 18 224.0 19 468.0 20 1005.0 21 1874.0 22 2695.0 23 3568.0 24 4440.0 25 5454.0 26 6462.0 27 8138.0 28 10373.0 29 13322.0 30 17614.0 31 22541.0 32 27820.0 33 35530.0 34 46334.0 35 50573.0 36 61726.0 37 76272.0 38 85944.0 39 37926.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.220401631423538 4.2843118608640856 54.47901837945006 16.01626812826232 2 18.579631796237276 10.113212186879835 52.228222551375815 19.078933465507074 3 18.734666981731976 9.97047223294853 51.40424992363508 19.890610861684408 4 18.204050894574152 4.373644402691887 52.20343997525585 25.218864727478113 5 22.236310508388613 4.8508530777462076 49.06738747461707 23.845448939248108 6 20.81582703682998 10.791563165791592 50.116516530362496 18.276093267015927 7 79.04700428604087 1.824881322198464 14.733721785805539 4.394392605955119 8 80.07461668655036 7.075329425755052 7.150253493094498 5.699800394600088 9 75.42317689572299 4.60494844647828 9.076570475690984 10.895304182107749 10 39.525135103462446 32.11207103570036 15.067229941962665 13.295563918874526 11 29.479738803174477 24.97353643518972 27.229135088093415 18.31758967354239 12 25.57753968574157 20.144392125672635 30.991860172479047 23.286208016106755 13 25.64958205818334 21.876290759172914 33.451290711144665 19.022836471499076 14 19.98801214922569 28.14071124072334 29.41845475835067 22.452821851700296 15 16.79567054158574 25.131837541568448 35.8519346738978 22.220557242948015 16 19.029944652246666 25.005042966070924 30.854499382356725 25.110512999325685 17 19.89041874869123 26.65855949835455 30.135036222904866 23.315985530049353 18 20.060054521667464 24.628117273455555 30.346936854380274 24.964891350496707 19 20.99583691143783 27.745919039742418 27.786454881302987 23.471789167516764 20 26.001725174678743 26.82685048037854 30.174611499499544 16.996812845443177 21 24.333800167906755 28.999648433222486 27.772238519807814 18.894312879062948 22 20.51478597651995 25.10647862646894 30.07490485604013 24.303830540970978 23 21.819809539178564 28.454623871576306 27.467547312627396 22.258019276617734 24 22.471456812038568 26.525233081088974 27.501551312419913 23.501758794452545 25 20.601621049436435 30.43012178042638 24.860958221187374 24.107298948949815 26 21.180265384888777 27.05027789144463 28.155696054191232 23.613760669475358 27 21.95025426154647 27.58761793336369 27.85369442891531 22.60843337617453 28 18.10895496295101 28.629062469381992 29.83706897048568 23.42491359718132 29 22.091457311532352 24.10153555915447 30.291992538331346 23.51501459098183 30 23.076612740549482 26.58036951013108 29.299536815573447 21.043480933745993 31 23.366511247255186 26.127559185210377 25.38312133664536 25.12280823088908 32 24.44368880000461 28.058294766649954 26.619176334753046 20.878840098592388 33 24.2817375467555 27.021076716481566 25.04711571157692 23.65007002518601 34 24.33456861987947 25.14566967707727 27.29272448883535 23.227037214207908 35 22.50027376101528 24.607561183185503 29.379071594749167 23.51309346105005 36 22.937330820495383 28.23234913846928 26.018054779098875 22.81226526193646 37 19.99089384412336 26.487963160412427 31.506915107189442 22.014227888274768 38 21.846321132237136 26.61053125006004 26.322361760292935 25.220785857409894 39 24.08578229371387 26.096436880315526 28.272884980029854 21.544895845940747 40 25.233081088973293 23.246440626518893 29.7896170611707 21.730861223337115 41 21.915097583794886 26.76479798358202 27.114827857152463 24.20527657547063 42 21.00467410912402 26.118337761537823 29.774248021716453 23.1027401076217 43 22.24860573995201 27.397618183110577 27.124433506811368 23.229342570126047 44 21.69474398061964 24.440999218100117 29.466098780658832 24.39815802062141 45 22.672599115896006 22.100678735204898 27.120591246947807 28.106130901951293 46 24.045438565146476 25.819217831159573 27.81988254211597 22.315461061577977 47 19.354423497724422 25.75716533436306 32.84651900862011 22.04189215929241 48 21.055007713336675 25.21732782353269 29.480123029160833 24.247541433969804 49 21.879364567063764 22.347736044431894 32.80790429699132 22.964995091513025 50 22.209414689343685 23.550747607712953 28.717050220257544 25.522787482685814 51 20.81505858485727 22.570395003525274 27.712683491922608 28.90186291969485 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 165.0 1 313.5 2 462.0 3 1014.0 4 1566.0 5 1120.5 6 675.0 7 741.0 8 807.0 9 1097.5 10 1388.0 11 1599.5 12 1811.0 13 1928.5 14 2046.0 15 1995.5 16 1945.0 17 1911.0 18 1877.0 19 1856.0 20 1835.0 21 1920.0 22 2005.0 23 2098.0 24 2191.0 25 2595.0 26 3736.5 27 4474.0 28 5180.0 29 5886.0 30 7024.5 31 8163.0 32 8912.5 33 9662.0 34 11532.5 35 13403.0 36 14592.0 37 15781.0 38 18113.0 39 20445.0 40 22283.5 41 24122.0 42 26215.5 43 28309.0 44 31771.0 45 35233.0 46 49993.5 47 64754.0 48 61512.5 49 58271.0 50 55777.0 51 53283.0 52 45455.0 53 37627.0 54 33513.0 55 29399.0 56 26667.0 57 23935.0 58 21911.0 59 19887.0 60 17743.5 61 15600.0 62 13532.5 63 11465.0 64 9358.0 65 7251.0 66 5797.0 67 4343.0 68 3488.0 69 2633.0 70 2121.5 71 1610.0 72 1493.0 73 1376.0 74 1140.0 75 707.0 76 510.0 77 377.0 78 244.0 79 174.5 80 105.0 81 69.5 82 34.0 83 33.5 84 33.0 85 18.0 86 3.0 87 2.5 88 2.0 89 3.0 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 2.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 520527.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.7629280855092 #Duplication Level Percentage of deduplicated Percentage of total 1 74.05506311506561 28.70591085897133 2 10.431751173964617 8.087304411246334 3 3.6863710771165348 4.2868361087630795 4 2.0096629638313965 3.116016837724308 5 1.3833792716509337 2.6811915610994626 6 1.0556384534604133 2.455178247347049 7 0.9329083042129415 2.5313580254606416 8 0.7494489579407881 2.3240668848334862 9 0.6671361907500144 2.3274136966755026 >10 4.863919093723767 30.705240312650822 >50 0.1056419909960887 2.837383705921344 >100 0.05106864019712659 3.6534711534843867 >500 0.002503364715545421 0.7768841980025498 >1k 0.004506056487981758 3.4186398070984043 >5k 0.0010013458862181684 2.0931041907213337 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGC 5431 1.0433656659500852 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCG 5354 1.028572965475374 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTC 3947 0.7582699840738328 No Hit CCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC 3065 0.5888263240907773 TruSeq Adapter, Index 21 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTGGTAT 2266 0.43532804254150126 No Hit GCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC 1766 0.3392715459524674 TruSeq Adapter, Index 21 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC 1513 0.2906669586784163 TruSeq Adapter, Index 21 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGCT 1485 0.2852877948694304 Illumina Paired End PCR Primer 2 (95% over 21bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTA 1370 0.2631948006539526 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTC 1190 0.22861446188190046 No Hit GAACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCT 1013 0.1946104620893825 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCT 962 0.18481269943730105 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 943 0.18116255256691777 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCC 901 0.17309380685343892 No Hit CGCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTG 696 0.13371064325193507 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.31525742180520894 0.0 2 0.0 0.0 0.0 1.6944365998305564 0.0 3 0.0 0.0 0.0 2.222363105083886 0.0 4 0.0 0.0 0.0 3.208479099066907 0.0 5 0.0 0.0 0.0 5.195888013494017 0.0 6 0.0 0.0 0.0 5.906321862266511 0.0 7 0.0 0.0 0.0 6.815784771971483 0.0 8 0.0 0.0 0.0 8.126955950411794 0.0 9 0.0 0.0 0.0 8.563436670912363 0.0 10 0.0 0.0 0.0 10.555840523162104 0.0 11 0.0 0.0 0.0 12.454877460727301 0.0 12 0.0 0.0 0.0 15.35501520574341 0.0 13 0.0 0.0 0.0 15.995135699012732 0.0 14 0.0 0.0 0.0 16.21779465810611 0.0 15 0.0 0.0 0.0 16.789138699817684 0.0 16 0.0 0.0 0.0 17.507641294303657 0.0 17 0.0 0.0 0.0 18.4874175595118 0.0 18 0.0 0.0 0.0 19.495434434717122 0.0 19 0.0 0.0 0.0 20.810255760027818 0.0 20 0.0 0.0 0.0 21.613672297498496 0.0 21 0.0 0.0 0.0 22.60728069821546 0.0 22 0.0 0.0 0.0 23.738249889054746 0.0 23 0.0 0.0 0.0 24.80370854922031 0.0 24 0.0 0.0 0.0 25.609622555602304 0.0 25 0.0 0.0 0.0 26.28797353451406 0.0 26 0.0 0.0 0.0 26.936354886490037 0.0 27 0.0 0.0 0.0 27.593957662138564 0.0 28 0.0 0.0 0.0 28.278648369825195 0.0 29 0.0 0.0 0.0 29.026544252267414 0.0 30 0.0 0.0 0.0 29.81228639436571 0.0 31 0.0 0.0 0.0 30.51714896633604 0.0 32 0.0 0.0 0.0 31.23008028401985 0.0 33 0.0 0.0 0.0 31.92975580517437 0.0 34 0.0 0.0 0.0 32.59965381238629 0.0 35 0.0 0.0 0.0 33.355810553535164 0.0 36 0.0 0.0 0.0 34.08718471856407 0.0 37 0.0 0.0 0.0 34.835656939985824 0.0 38 0.0 0.0 0.0 35.53955894699026 0.0 39 0.0 0.0 0.0 36.30877937167524 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGATCG 90 0.0 45.000004 40 ATGGGCG 35 1.21021E-7 45.0 5 TCGTTGC 20 7.0297264E-4 45.0 1 CGCGGAA 20 7.0297264E-4 45.0 41 ACCGCAT 20 7.0297264E-4 45.0 22 CGCATCG 25 3.887855E-5 45.0 21 CGCGCGA 20 7.0297264E-4 45.0 41 CGATTCG 40 6.8030204E-9 45.0 10 TACGGAG 20 7.0297264E-4 45.0 29 CGGGCCA 35 1.21021E-7 45.0 6 CGAATAT 55 1.8189894E-12 45.0 14 TCGTAAC 50 2.1827873E-11 45.0 34 TATAGCG 70 0.0 45.0 1 CGTAACC 50 2.1827873E-11 45.0 35 GCTACGA 55 1.8189894E-12 45.0 10 CGATCGA 85 0.0 45.0 41 GATTACG 20 7.0297264E-4 45.0 11 TCGAAGG 20 7.0297264E-4 45.0 44 TCGAACG 25 3.887855E-5 45.0 12 GCATCGC 25 3.887855E-5 45.0 22 >>END_MODULE