SRR2934055.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934055.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	211055
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	996	0.47191490369808814	TruSeq Adapter, Index 13 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	938	0.4444339153301272	TruSeq Adapter, Index 13 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	888	0.4207434081163678	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGCT	859	0.4070029139323873	Illumina PCR Primer Index 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC	578	0.2738622633910592	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCG	434	0.20563360261543198	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTC	340	0.16109544905356424	No Hit
TGTTGACGGGGGAAGTGACTGAATCAATTAGAAATGGAATTGTTAGCATAT	230	0.10897633318329344	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCACACTAT	229	0.10850252303901828	No Hit
TTCCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCT	229	0.10850252303901828	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	221	0.10471204188481677	No Hit
TGGGTTGGGTTTCTTTTCTAGTGTGTAACACGAGGATCTGCAGAATTTCCC	214	0.10139537087489044	No Hit
TTCTTTGGGGAATTATTTAATAGTTGTAACCTTGGTCTCTAACTTCTGTGT	213	0.10092156073061523	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTCG	30	2.1570559E-6	45.000004	1
TAATAGT	60	0.0	45.000004	18
GGGTAAC	35	1.2056262E-7	45.000004	7
TGACCTC	30	2.1570559E-6	45.000004	11
TCGACGT	30	2.1570559E-6	45.000004	26
TTCGACG	30	2.1570559E-6	45.000004	25
GACTAAT	35	1.2056262E-7	45.000004	9
GTTGACG	55	1.8189894E-12	45.0	2
GTGCAAT	20	7.0201897E-4	45.0	21
ATGGGCG	20	7.0201897E-4	45.0	5
CGTGGGT	20	7.0201897E-4	45.0	4
CATATGC	45	3.8198777E-10	45.0	33
GGTAACA	20	7.0201897E-4	45.0	8
CCTAGCG	20	7.0201897E-4	45.0	22
CCCTACA	20	7.0201897E-4	45.0	27
CGGTTGG	25	3.8799524E-5	45.0	2
TAGCGCA	20	7.0201897E-4	45.0	24
TAAACTC	25	3.8799524E-5	45.0	10
TTCCGTT	20	7.0201897E-4	45.0	15
ATTCGAA	25	3.8799524E-5	45.0	42