SRR2934049.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934049.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1017850
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3078	0.3024021221201552	No Hit
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT	2700	0.26526501940364494	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2598	0.2552438964483961	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1981	0.19462592719948912	No Hit
TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	1929	0.18951711941838187	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	1712	0.16819767156260745	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC	1704	0.1674117011347448	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1181	0.11602888441322395	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAT	25	3.8904895E-5	45.000004	44
TTGCCCG	110	0.0	40.909092	1
CGTTTTT	1635	0.0	39.63303	1
CGTTTGG	670	0.0	39.626865	2
TTGGGAC	2090	0.0	39.07895	5
CGTATAA	35	6.247583E-6	38.57143	28
CTTTGCG	280	0.0	38.57143	1
GGCGATT	835	0.0	38.532936	8
TTTGGGA	5770	0.0	38.526863	4
TTGGGAT	3690	0.0	37.92683	5
TTTGGGC	1875	0.0	37.92	4
TTTCGCG	305	0.0	37.622948	1
GGTCCGT	30	1.1398299E-4	37.500004	10
TGGGCGA	1280	0.0	37.44141	6
GGGCGAT	1920	0.0	37.382816	7
CTTGGGA	3010	0.0	37.375416	4
TTGTTCG	250	0.0	36.899998	1
ACGGGAT	110	0.0	36.81818	5
TTACACG	515	0.0	36.699028	34
TGGGATG	1590	0.0	36.650944	6