SRR2934048.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934048.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	449040
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC	2782	0.6195439159094959	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG	2159	0.48080349189381794	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC	1894	0.4217887047924461	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTCCAT	1113	0.2478621058257616	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	1093	0.24340815962943166	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	876	0.19508284339925175	No Hit
GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	874	0.19463744877961875	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTA	564	0.12560128273650453	No Hit
TCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	534	0.11892036344200961	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC	533	0.11869766613219312	No Hit
GAACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT	513	0.11424371993586316	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGGG	20	7.0286903E-4	45.0	32
CGAACCC	25	3.8869963E-5	45.0	34
CGAAATA	20	7.0286903E-4	45.0	17
GCGAACC	25	3.8869963E-5	45.0	33
ATTCGCG	20	7.0286903E-4	45.0	1
TACGGGA	90	0.0	45.0	4
TACGCGG	20	7.0286903E-4	45.0	2
ACTACGG	20	7.0286903E-4	45.0	25
TGTTACG	35	1.2097189E-7	45.0	1
TACTACG	20	7.0286903E-4	45.0	24
CGACTCC	20	7.0286903E-4	45.0	28
TACCGGT	20	7.0286903E-4	45.0	40
TTTAGCG	30	2.1625365E-6	44.999996	1
GCCGATC	30	2.1625365E-6	44.999996	9
TTGCGGA	30	2.1625365E-6	44.999996	3
CTACGGC	65	0.0	41.538464	6
CGATGAA	515	0.0	40.631065	19
TCGGGTA	50	1.0786607E-9	40.5	5
CGAATAT	50	1.0786607E-9	40.5	14
TGGGCGA	700	0.0	40.17857	6