SRR2934045.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934045.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	722394
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	2925	0.4049036952134154	No Hit
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	2010	0.27824151363383415	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1915	0.2650907953277574	No Hit
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1876	0.25969207939157857	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	938	0.12984603969578928	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	892	0.12347832346337316	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCC	837	0.11586474970722348	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCAAT	20	7.031544E-4	45.0	17
GCGATAT	35	1.2110831E-7	45.0	9
TTCGCGA	20	7.031544E-4	45.0	2
CTACGAA	95	0.0	42.63158	11
GGCGATA	70	0.0	41.785713	8
TTTGTCG	285	0.0	41.05263	1
TTACACG	385	0.0	40.909092	34
TTGGGAC	1220	0.0	40.758194	5
GCTACGA	100	0.0	40.499996	10
TCGTTCA	90	0.0	40.0	16
CGCGACC	180	0.0	40.0	10
CGAGATA	465	0.0	39.67742	19
AGACACG	115	0.0	39.130436	24
ACACGCG	390	0.0	38.653847	36
TACGAAT	105	0.0	38.57143	12
ACCGGTA	35	6.245067E-6	38.571426	41
CGTTAGG	35	6.245067E-6	38.571426	2
TTTGGGC	1620	0.0	38.333336	4
CGTTTGG	530	0.0	38.207546	2
TACACGC	415	0.0	37.95181	35