SRR2934044.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934044.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	785758
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGC	5150	0.6554180803758919	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCG	4796	0.6103660414529665	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4729	0.6018392431257461	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC	3255	0.4142496799268986	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCCCAGAT	2258	0.28736583019199297	No Hit
CCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC	2155	0.2742574685844751	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCT	1685	0.2144426146472578	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC	1556	0.1980253462261918	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTA	1095	0.13935588310904884	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCC	994	0.1265020527948809	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTC	928	0.11810252011433546	No Hit
CGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG	913	0.1161935354142115	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCT	912	0.11606626976753656	No Hit
TCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC	878	0.11173923778058893	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCT	872	0.11097564390053936	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC	838	0.10664861191359172	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAATC	20	7.0319226E-4	45.0	43
TCGAATT	20	7.0319226E-4	45.0	18
CCGTTAG	20	7.0319226E-4	45.0	1
GCGATCT	250	0.0	43.2	9
CGTTTTT	2715	0.0	42.928173	1
CGATCGA	155	0.0	42.096775	41
CCGATGA	945	0.0	41.90476	18
CGATGAA	945	0.0	41.42857	19
TCGATTG	60	3.6379788E-12	41.249996	1
TGGGCGA	970	0.0	40.12887	6
TACGGCT	630	0.0	40.0	7
ACGGGAC	90	0.0	40.0	5
TACGAAT	80	0.0	39.375	12
ATACGGA	40	3.4563527E-7	39.375	28
TGCGTTG	160	0.0	39.375	1
GGGCGAT	1555	0.0	39.35691	7
GGCGATT	805	0.0	39.130436	8
TTTCTCG	300	0.0	39.0	1
TTTCGCG	255	0.0	38.82353	1
TTTGGGA	5815	0.0	38.654343	4