Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934044.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 785758 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGC | 5150 | 0.6554180803758919 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCG | 4796 | 0.6103660414529665 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4729 | 0.6018392431257461 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC | 3255 | 0.4142496799268986 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCCCAGAT | 2258 | 0.28736583019199297 | No Hit |
CCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC | 2155 | 0.2742574685844751 | Illumina Single End Adapter 2 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCT | 1685 | 0.2144426146472578 | Illumina Single End Adapter 2 (95% over 22bp) |
GCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC | 1556 | 0.1980253462261918 | Illumina Single End Adapter 2 (95% over 21bp) |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTA | 1095 | 0.13935588310904884 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCC | 994 | 0.1265020527948809 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTC | 928 | 0.11810252011433546 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG | 913 | 0.1161935354142115 | No Hit |
GAACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCT | 912 | 0.11606626976753656 | No Hit |
TCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC | 878 | 0.11173923778058893 | Illumina Single End Adapter 2 (95% over 21bp) |
GAATGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCT | 872 | 0.11097564390053936 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC | 838 | 0.10664861191359172 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTAATC | 20 | 7.0319226E-4 | 45.0 | 43 |
TCGAATT | 20 | 7.0319226E-4 | 45.0 | 18 |
CCGTTAG | 20 | 7.0319226E-4 | 45.0 | 1 |
GCGATCT | 250 | 0.0 | 43.2 | 9 |
CGTTTTT | 2715 | 0.0 | 42.928173 | 1 |
CGATCGA | 155 | 0.0 | 42.096775 | 41 |
CCGATGA | 945 | 0.0 | 41.90476 | 18 |
CGATGAA | 945 | 0.0 | 41.42857 | 19 |
TCGATTG | 60 | 3.6379788E-12 | 41.249996 | 1 |
TGGGCGA | 970 | 0.0 | 40.12887 | 6 |
TACGGCT | 630 | 0.0 | 40.0 | 7 |
ACGGGAC | 90 | 0.0 | 40.0 | 5 |
TACGAAT | 80 | 0.0 | 39.375 | 12 |
ATACGGA | 40 | 3.4563527E-7 | 39.375 | 28 |
TGCGTTG | 160 | 0.0 | 39.375 | 1 |
GGGCGAT | 1555 | 0.0 | 39.35691 | 7 |
GGCGATT | 805 | 0.0 | 39.130436 | 8 |
TTTCTCG | 300 | 0.0 | 39.0 | 1 |
TTTCGCG | 255 | 0.0 | 38.82353 | 1 |
TTTGGGA | 5815 | 0.0 | 38.654343 | 4 |