FastQCFastQC Report
Sat 14 Jan 2017
SRR2934044.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934044.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences785758
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGC51500.6554180803758919No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCG47960.6103660414529665No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47290.6018392431257461No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC32550.4142496799268986No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCCCAGAT22580.28736583019199297No Hit
CCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC21550.2742574685844751Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCT16850.2144426146472578Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC15560.1980253462261918Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTA10950.13935588310904884No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCC9940.1265020527948809No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTC9280.11810252011433546No Hit
CGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG9130.1161935354142115No Hit
GAACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCT9120.11606626976753656No Hit
TCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC8780.11173923778058893Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCT8720.11097564390053936No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC8380.10664861191359172No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTAATC207.0319226E-445.043
TCGAATT207.0319226E-445.018
CCGTTAG207.0319226E-445.01
GCGATCT2500.043.29
CGTTTTT27150.042.9281731
CGATCGA1550.042.09677541
CCGATGA9450.041.9047618
CGATGAA9450.041.4285719
TCGATTG603.6379788E-1241.2499961
TGGGCGA9700.040.128876
TACGGCT6300.040.07
ACGGGAC900.040.05
TACGAAT800.039.37512
ATACGGA403.4563527E-739.37528
TGCGTTG1600.039.3751
GGGCGAT15550.039.356917
GGCGATT8050.039.1304368
TTTCTCG3000.039.01
TTTCGCG2550.038.823531
TTTGGGA58150.038.6543434