SRR2934042.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934042.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	427990
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGC	6657	1.5554101731348864	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCG	5242	1.2247949718451365	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC	3672	0.8579639711208206	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAAACAGTT	2363	0.5521157036379355	No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	1351	0.3156615808780579	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTA	1335	0.3119231757751349	No Hit
GAACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT	1067	0.24930489030117525	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTC	986	0.23037921446762774	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCT	879	0.2053786303418304	No Hit
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	678	0.15841491623636067	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT	598	0.13972289072174585	Illumina Single End Adapter 1 (95% over 22bp)
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGATCGAATGC	558	0.13037687796443842	No Hit
TCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	485	0.11332040468235238	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGT	432	0.10093693777892007	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	430	0.10046963714105471	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAACTCG	20	7.028318E-4	45.000004	32
CGGGTCG	20	7.028318E-4	45.000004	6
CGTATGA	30	2.1622964E-6	45.000004	45
TTTACCG	20	7.028318E-4	45.000004	1
TCGGGTA	30	2.1622964E-6	45.000004	5
AGGGTAC	30	2.1622964E-6	45.000004	6
AGCGATA	20	7.028318E-4	45.000004	34
CGAATGT	20	7.028318E-4	45.000004	45
TCATCGA	20	7.028318E-4	45.000004	16
TCGACAA	20	7.028318E-4	45.000004	19
CGGGTAT	50	2.1827873E-11	45.0	6
CGACGGA	25	3.8866878E-5	45.0	41
CCGATCG	330	0.0	45.0	40
ACCGCGT	45	3.8380676E-10	45.0	39
GTTAGCG	25	3.8866878E-5	45.0	1
TACGCCG	25	3.8866878E-5	45.0	29
CCGCGTA	45	3.8380676E-10	45.0	40
GCGTAAG	35	1.209537E-7	45.0	42
GATAGTA	25	3.8866878E-5	45.0	9
ATCGAAT	285	0.0	45.0	43