SRR2934041.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934041.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	550719
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGC	5358	0.9729099595256384	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG	4273	0.7758947848176656	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	3190	0.579242771722058	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCTGTGT	1950	0.3540825720558034	No Hit
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	1236	0.22443387644152463	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTA	1117	0.2028257605058115	No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	950	0.17250176587334012	TruSeq Adapter, Index 14 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCT	879	0.15960952863438524	No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT	815	0.14798835703870758	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTC	781	0.1418146096285038	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT	726	0.13182766528846834	No Hit
TCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	663	0.12038807449897317	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTAAG	30	2.163435E-6	45.000004	42
CGACGCC	20	7.030084E-4	45.0	21
CCGATCG	20	7.030084E-4	45.0	40
CCGATCA	45	3.8380676E-10	45.0	40
TTCGTAC	20	7.030084E-4	45.0	33
TTACTCG	25	3.8881502E-5	45.0	1
TTATCCG	20	7.030084E-4	45.0	1
CTTATCG	20	7.030084E-4	45.0	13
TCGTACA	25	3.8881502E-5	45.0	34
CGTAAGC	25	3.8881502E-5	45.0	43
CCGAATC	20	7.030084E-4	45.0	19
CGATCGA	20	7.030084E-4	45.0	41
CGATCAA	40	6.8048394E-9	45.0	41
ATCGACG	20	7.030084E-4	45.0	16
TCGAATG	140	0.0	41.785717	44
GCGAGAC	220	0.0	40.909092	21
TTGCCCG	50	1.0786607E-9	40.5	1
ACATACG	50	1.0786607E-9	40.5	17
TTCGTTG	245	0.0	40.408165	1
GCGCGAC	90	0.0	40.0	9