FastQCFastQC Report
Sat 14 Jan 2017
SRR2934041.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934041.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550719
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGC53580.9729099595256384No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG42730.7758947848176656No Hit
GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC31900.579242771722058No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCTGTGT19500.3540825720558034No Hit
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC12360.22443387644152463TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTA11170.2028257605058115No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC9500.17250176587334012TruSeq Adapter, Index 14 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCT8790.15960952863438524No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT8150.14798835703870758TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTC7810.1418146096285038No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT7260.13182766528846834No Hit
TCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC6630.12038807449897317TruSeq Adapter, Index 14 (95% over 21bp)

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTAAG302.163435E-645.00000442
CGACGCC207.030084E-445.021
CCGATCG207.030084E-445.040
CCGATCA453.8380676E-1045.040
TTCGTAC207.030084E-445.033
TTACTCG253.8881502E-545.01
TTATCCG207.030084E-445.01
CTTATCG207.030084E-445.013
TCGTACA253.8881502E-545.034
CGTAAGC253.8881502E-545.043
CCGAATC207.030084E-445.019
CGATCGA207.030084E-445.041
CGATCAA406.8048394E-945.041
ATCGACG207.030084E-445.016
TCGAATG1400.041.78571744
GCGAGAC2200.040.90909221
TTGCCCG501.0786607E-940.51
ACATACG501.0786607E-940.517
TTCGTTG2450.040.4081651
GCGCGAC900.040.09