Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934041.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 550719 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGC | 5358 | 0.9729099595256384 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG | 4273 | 0.7758947848176656 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC | 3190 | 0.579242771722058 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCTGTGT | 1950 | 0.3540825720558034 | No Hit |
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC | 1236 | 0.22443387644152463 | TruSeq Adapter, Index 14 (95% over 21bp) |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTA | 1117 | 0.2028257605058115 | No Hit |
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC | 950 | 0.17250176587334012 | TruSeq Adapter, Index 14 (95% over 21bp) |
GAACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCT | 879 | 0.15960952863438524 | No Hit |
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT | 815 | 0.14798835703870758 | TruSeq Adapter, Index 15 (95% over 22bp) |
GAATGATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTC | 781 | 0.1418146096285038 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT | 726 | 0.13182766528846834 | No Hit |
TCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC | 663 | 0.12038807449897317 | TruSeq Adapter, Index 14 (95% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGTAAG | 30 | 2.163435E-6 | 45.000004 | 42 |
CGACGCC | 20 | 7.030084E-4 | 45.0 | 21 |
CCGATCG | 20 | 7.030084E-4 | 45.0 | 40 |
CCGATCA | 45 | 3.8380676E-10 | 45.0 | 40 |
TTCGTAC | 20 | 7.030084E-4 | 45.0 | 33 |
TTACTCG | 25 | 3.8881502E-5 | 45.0 | 1 |
TTATCCG | 20 | 7.030084E-4 | 45.0 | 1 |
CTTATCG | 20 | 7.030084E-4 | 45.0 | 13 |
TCGTACA | 25 | 3.8881502E-5 | 45.0 | 34 |
CGTAAGC | 25 | 3.8881502E-5 | 45.0 | 43 |
CCGAATC | 20 | 7.030084E-4 | 45.0 | 19 |
CGATCGA | 20 | 7.030084E-4 | 45.0 | 41 |
CGATCAA | 40 | 6.8048394E-9 | 45.0 | 41 |
ATCGACG | 20 | 7.030084E-4 | 45.0 | 16 |
TCGAATG | 140 | 0.0 | 41.785717 | 44 |
GCGAGAC | 220 | 0.0 | 40.909092 | 21 |
TTGCCCG | 50 | 1.0786607E-9 | 40.5 | 1 |
ACATACG | 50 | 1.0786607E-9 | 40.5 | 17 |
TTCGTTG | 245 | 0.0 | 40.408165 | 1 |
GCGCGAC | 90 | 0.0 | 40.0 | 9 |