SRR2934040.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934040.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1118079
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGC	3469	0.3102643015386211	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	2372	0.2121495887142143	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCG	2298	0.2055310939566882	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1672	0.14954220587275138	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCTACGCAT	1178	0.10535928141034757	No Hit
GCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	1143	0.10222891226827442	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	20	7.0332026E-4	45.000004	2
CGATCAT	20	7.0332026E-4	45.000004	10
TATCGCG	20	7.0332026E-4	45.000004	1
CGCGCAT	45	1.9283107E-8	40.0	36
TACGCGC	45	1.9283107E-8	40.0	34
CGTCATA	40	3.458099E-7	39.375004	38
ACGGGTA	35	6.248136E-6	38.571426	5
TCGATAA	35	6.248136E-6	38.571426	20
TCGTACG	35	6.248136E-6	38.571426	29
CGATGAA	895	0.0	38.463684	19
CGTTTTT	1430	0.0	38.39161	1
TGGGCGA	1460	0.0	38.219177	6
TTTGGGC	2785	0.0	38.13286	4
TTTACGG	95	0.0	37.894737	2
TTTGTCG	345	0.0	37.826088	1
CCGATGA	920	0.0	37.66304	18
TATTGCG	30	1.1399022E-4	37.499996	1
TCGCGTA	30	1.1399022E-4	37.499996	12
TTTGGGA	5525	0.0	37.34389	4
TTGGGAC	2270	0.0	37.070484	5