SRR2934038.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934038.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	390716
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	1651	0.4225575609905916	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	1400	0.35831652658196744	No Hit
TCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	1355	0.34679920965611855	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	1276	0.32657991994185037	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCT	25	3.886063E-5	45.0	6
CAAACGG	25	3.886063E-5	45.0	35
CACGGTC	20	7.027566E-4	45.0	45
GTCGTTT	20	7.027566E-4	45.0	9
GACGGGT	20	7.027566E-4	45.0	4
TTTATCG	20	7.027566E-4	45.0	1
CCAACGG	20	7.027566E-4	45.0	7
CGCAAGA	20	7.027566E-4	45.0	23
TCGACGT	20	7.027566E-4	45.0	26
ATCGCAA	20	7.027566E-4	45.0	21
TTACACG	135	0.0	43.333336	34
CGTTTGG	270	0.0	42.500004	2
CGAGATA	175	0.0	42.42857	19
GCGATTC	80	0.0	42.1875	9
TCCCGCT	60	3.6379788E-12	41.250004	14
GCCGATT	55	6.002665E-11	40.909092	9
TGGGCGA	485	0.0	40.36082	6
ACACGCG	140	0.0	40.17857	36
CACGCGG	140	0.0	40.17857	37
GGCCGAT	90	0.0	40.0	8