SRR2934036.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934036.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	415532
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGC	2147	0.5166870421531916	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG	1793	0.43149504731284233	No Hit
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	1519	0.3655554806850014	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC	1407	0.33860208118748975	No Hit
GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	1038	0.24980025605729522	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGGGTGAT	1036	0.2493189453519825	No Hit
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT	1027	0.24715304717807535	Illumina Single End Adapter 1 (95% over 21bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	592	0.14246796877256143	No Hit
TCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	557	0.13404503142958904	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTA	464	0.11166408363254816	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTC	453	0.10901687475332825	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTGC	30	2.1621436E-6	45.000004	1
AGGCACG	30	2.1621436E-6	45.000004	10
TCGGACC	20	7.0280815E-4	45.0	6
CGCTATA	20	7.0280815E-4	45.0	22
TTGCCCG	25	3.886492E-5	45.0	1
CGATAAC	25	3.886492E-5	45.0	16
TGCGTTG	45	3.8380676E-10	45.0	1
GTCGGCG	35	1.2094279E-7	45.0	3
TGGGCGA	400	0.0	41.625	6
CCGATCG	65	0.0	41.538464	40
ATCCGGC	60	3.6379788E-12	41.250004	6
GCGATTC	60	3.6379788E-12	41.250004	9
CGGATGA	50	1.0786607E-9	40.5	44
TTTCGCG	140	0.0	40.17857	1
CGGGTCC	90	0.0	40.0	6
CGGGATA	90	0.0	40.0	6
TTACGGG	90	0.0	40.0	3
CTTTGCG	130	0.0	39.807693	1
TCGGGAT	165	0.0	39.545452	5
TCGGCGT	40	3.451114E-7	39.375	4