FastQCFastQC Report
Sat 14 Jan 2017
SRR2934033.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934033.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489971
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC26020.5310518377618267No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC18820.3841043653603989No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT18640.38043067855036317No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC17220.35144937149341493No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG15540.3171616279330818No Hit
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC14630.2985891001712346No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC12940.2640972628992328No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCCGAAT6870.1402123799163624No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC6200.12653810123456286No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5070.10347551181600542No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCAGG302.162942E-645.0000042
CCGATCG207.029319E-445.00000440
CTACGGG453.8380676E-1045.0000043
CTACGGC453.8380676E-1045.0000046
CTCGATT453.8380676E-1045.00000424
TTCGCAG253.8875172E-545.0000041
CGATCGA207.029319E-445.00000441
TATCGGG302.162942E-645.0000043
TATCGAC253.8875172E-545.00000415
TTCGGGC1100.040.9090924
CCGATGA1600.040.78125418
ATCTCGA501.0786607E-940.50000422
TCTCGAT501.0786607E-940.50000423
CTTGTCG950.040.2631571
TTCGGGA4550.040.0549434
TCTTGCG850.039.7058831
TTCCGCG850.039.7058831
GCACGGG750.039.03
CTGCTCG356.2409526E-638.571431
CCGGGTC356.2409526E-638.571435