SRR2934033.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934033.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	489971
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2602	0.5310518377618267	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC	1882	0.3841043653603989	No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT	1864	0.38043067855036317	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	1722	0.35144937149341493	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	1554	0.3171616279330818	No Hit
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	1463	0.2985891001712346	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	1294	0.2640972628992328	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCCGAAT	687	0.1402123799163624	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC	620	0.12653810123456286	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	507	0.10347551181600542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAGG	30	2.162942E-6	45.000004	2
CCGATCG	20	7.029319E-4	45.000004	40
CTACGGG	45	3.8380676E-10	45.000004	3
CTACGGC	45	3.8380676E-10	45.000004	6
CTCGATT	45	3.8380676E-10	45.000004	24
TTCGCAG	25	3.8875172E-5	45.000004	1
CGATCGA	20	7.029319E-4	45.000004	41
TATCGGG	30	2.162942E-6	45.000004	3
TATCGAC	25	3.8875172E-5	45.000004	15
TTCGGGC	110	0.0	40.909092	4
CCGATGA	160	0.0	40.781254	18
ATCTCGA	50	1.0786607E-9	40.500004	22
TCTCGAT	50	1.0786607E-9	40.500004	23
CTTGTCG	95	0.0	40.263157	1
TTCGGGA	455	0.0	40.054943	4
TCTTGCG	85	0.0	39.705883	1
TTCCGCG	85	0.0	39.705883	1
GCACGGG	75	0.0	39.0	3
CTGCTCG	35	6.2409526E-6	38.57143	1
CCGGGTC	35	6.2409526E-6	38.57143	5