Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934033.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 489971 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC | 2602 | 0.5310518377618267 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC | 1882 | 0.3841043653603989 | No Hit |
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT | 1864 | 0.38043067855036317 | No Hit |
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC | 1722 | 0.35144937149341493 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG | 1554 | 0.3171616279330818 | No Hit |
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC | 1463 | 0.2985891001712346 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC | 1294 | 0.2640972628992328 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCCGAAT | 687 | 0.1402123799163624 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC | 620 | 0.12653810123456286 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 507 | 0.10347551181600542 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCAGG | 30 | 2.162942E-6 | 45.000004 | 2 |
CCGATCG | 20 | 7.029319E-4 | 45.000004 | 40 |
CTACGGG | 45 | 3.8380676E-10 | 45.000004 | 3 |
CTACGGC | 45 | 3.8380676E-10 | 45.000004 | 6 |
CTCGATT | 45 | 3.8380676E-10 | 45.000004 | 24 |
TTCGCAG | 25 | 3.8875172E-5 | 45.000004 | 1 |
CGATCGA | 20 | 7.029319E-4 | 45.000004 | 41 |
TATCGGG | 30 | 2.162942E-6 | 45.000004 | 3 |
TATCGAC | 25 | 3.8875172E-5 | 45.000004 | 15 |
TTCGGGC | 110 | 0.0 | 40.909092 | 4 |
CCGATGA | 160 | 0.0 | 40.781254 | 18 |
ATCTCGA | 50 | 1.0786607E-9 | 40.500004 | 22 |
TCTCGAT | 50 | 1.0786607E-9 | 40.500004 | 23 |
CTTGTCG | 95 | 0.0 | 40.263157 | 1 |
TTCGGGA | 455 | 0.0 | 40.054943 | 4 |
TCTTGCG | 85 | 0.0 | 39.705883 | 1 |
TTCCGCG | 85 | 0.0 | 39.705883 | 1 |
GCACGGG | 75 | 0.0 | 39.0 | 3 |
CTGCTCG | 35 | 6.2409526E-6 | 38.57143 | 1 |
CCGGGTC | 35 | 6.2409526E-6 | 38.57143 | 5 |