Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934027.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 240234 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC | 2149 | 0.8945444857930186 | TruSeq Adapter, Index 23 (95% over 22bp) |
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGC | 1623 | 0.6755912984839781 | No Hit |
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT | 1523 | 0.633965217246518 | TruSeq Adapter, Index 20 (95% over 24bp) |
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC | 1320 | 0.5494642723344739 | TruSeq Adapter, Index 23 (95% over 22bp) |
GAATGATACCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCG | 1275 | 0.5307325357776168 | No Hit |
TCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC | 1188 | 0.49451784510102653 | TruSeq Adapter, Index 23 (95% over 22bp) |
GAATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTC | 872 | 0.36297942839065245 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGACCTTAT | 656 | 0.27306709291773856 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGACCTTATCGTA | 352 | 0.1465238059558597 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG | 310 | 0.12904085183612643 | TruSeq Adapter, Index 20 (95% over 22bp) |
TTCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT | 291 | 0.12113189640100902 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCT | 267 | 0.11114163690401858 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 257 | 0.10697902878027256 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTC | 253 | 0.10531398553077416 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTTGCG | 40 | 6.7757355E-9 | 45.000004 | 1 |
CGTGGCA | 20 | 7.022134E-4 | 45.000004 | 15 |
AGGTAAG | 20 | 7.022134E-4 | 45.000004 | 31 |
TTGGATA | 20 | 7.022134E-4 | 45.000004 | 5 |
GGCACGT | 20 | 7.022134E-4 | 45.000004 | 11 |
ACACCGC | 20 | 7.022134E-4 | 45.000004 | 33 |
GGCAATC | 20 | 7.022134E-4 | 45.000004 | 16 |
TCGGGTA | 20 | 7.022134E-4 | 45.000004 | 5 |
TATGCCA | 20 | 7.022134E-4 | 45.000004 | 10 |
TCTACGG | 20 | 7.022134E-4 | 45.000004 | 2 |
CTACGGC | 20 | 7.022134E-4 | 45.000004 | 6 |
GAGCGGT | 20 | 7.022134E-4 | 45.000004 | 32 |
GTCACGT | 20 | 7.022134E-4 | 45.000004 | 38 |
CGGGCTA | 20 | 7.022134E-4 | 45.000004 | 6 |
GCTAGTG | 20 | 7.022134E-4 | 45.000004 | 1 |
CGCAGAC | 20 | 7.022134E-4 | 45.000004 | 37 |
GTATCAA | 20 | 7.022134E-4 | 45.000004 | 35 |
TTACGTG | 20 | 7.022134E-4 | 45.000004 | 1 |
CGGCTAT | 20 | 7.022134E-4 | 45.000004 | 14 |
GTCTTAC | 20 | 7.022134E-4 | 45.000004 | 31 |