SRR2934027.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934027.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	240234
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	2149	0.8945444857930186	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGC	1623	0.6755912984839781	No Hit
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT	1523	0.633965217246518	TruSeq Adapter, Index 20 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	1320	0.5494642723344739	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCG	1275	0.5307325357776168	No Hit
TCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	1188	0.49451784510102653	TruSeq Adapter, Index 23 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTC	872	0.36297942839065245	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGACCTTAT	656	0.27306709291773856	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGACCTTATCGTA	352	0.1465238059558597	No Hit
CGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	310	0.12904085183612643	TruSeq Adapter, Index 20 (95% over 22bp)
TTCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT	291	0.12113189640100902	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCT	267	0.11114163690401858	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	257	0.10697902878027256	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTC	253	0.10531398553077416	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	40	6.7757355E-9	45.000004	1
CGTGGCA	20	7.022134E-4	45.000004	15
AGGTAAG	20	7.022134E-4	45.000004	31
TTGGATA	20	7.022134E-4	45.000004	5
GGCACGT	20	7.022134E-4	45.000004	11
ACACCGC	20	7.022134E-4	45.000004	33
GGCAATC	20	7.022134E-4	45.000004	16
TCGGGTA	20	7.022134E-4	45.000004	5
TATGCCA	20	7.022134E-4	45.000004	10
TCTACGG	20	7.022134E-4	45.000004	2
CTACGGC	20	7.022134E-4	45.000004	6
GAGCGGT	20	7.022134E-4	45.000004	32
GTCACGT	20	7.022134E-4	45.000004	38
CGGGCTA	20	7.022134E-4	45.000004	6
GCTAGTG	20	7.022134E-4	45.000004	1
CGCAGAC	20	7.022134E-4	45.000004	37
GTATCAA	20	7.022134E-4	45.000004	35
TTACGTG	20	7.022134E-4	45.000004	1
CGGCTAT	20	7.022134E-4	45.000004	14
GTCTTAC	20	7.022134E-4	45.000004	31