FastQCFastQC Report
Sat 14 Jan 2017
SRR2934027.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934027.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences240234
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC21490.8945444857930186TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGC16230.6755912984839781No Hit
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT15230.633965217246518TruSeq Adapter, Index 20 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC13200.5494642723344739TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCG12750.5307325357776168No Hit
TCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC11880.49451784510102653TruSeq Adapter, Index 23 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTC8720.36297942839065245No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGACCTTAT6560.27306709291773856No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGACCTTATCGTA3520.1465238059558597No Hit
CGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG3100.12904085183612643TruSeq Adapter, Index 20 (95% over 22bp)
TTCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT2910.12113189640100902No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCT2670.11114163690401858No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2570.10697902878027256No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTC2530.10531398553077416No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTTGCG406.7757355E-945.0000041
CGTGGCA207.022134E-445.00000415
AGGTAAG207.022134E-445.00000431
TTGGATA207.022134E-445.0000045
GGCACGT207.022134E-445.00000411
ACACCGC207.022134E-445.00000433
GGCAATC207.022134E-445.00000416
TCGGGTA207.022134E-445.0000045
TATGCCA207.022134E-445.00000410
TCTACGG207.022134E-445.0000042
CTACGGC207.022134E-445.0000046
GAGCGGT207.022134E-445.00000432
GTCACGT207.022134E-445.00000438
CGGGCTA207.022134E-445.0000046
GCTAGTG207.022134E-445.0000041
CGCAGAC207.022134E-445.00000437
GTATCAA207.022134E-445.00000435
TTACGTG207.022134E-445.0000041
CGGCTAT207.022134E-445.00000414
GTCTTAC207.022134E-445.00000431