SRR2934024.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934024.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	575055
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGC	2141	0.37231221361434996	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCG	1634	0.2841467337906809	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	1105	0.19215553294902227	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1097	0.19076436166975333	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	1088	0.18919929398057575	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	908	0.15789794019702463	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTCACCCGT	759	0.13198737512064063	No Hit
TCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	743	0.12920503256210275	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAT	25	3.8883656E-5	45.0	43
GCGTTAG	20	7.0303446E-4	45.0	1
AAACACG	110	0.0	42.954544	40
CGAATAT	80	0.0	42.1875	14
GCGAGAC	110	0.0	40.909092	21
AACACGT	105	0.0	40.714287	41
CCGATGA	300	0.0	40.5	18
TGTTGCG	90	0.0	40.000004	1
CTACGAA	85	0.0	39.705883	11
TACGAAT	85	0.0	39.705883	12
ACGGGAT	40	3.4542063E-7	39.375	5
CGTCGAA	40	3.4542063E-7	39.375	42
CAATCGG	40	3.4542063E-7	39.375	20
ACATACG	75	0.0	39.0	17
TTGGGAT	1590	0.0	38.915096	5
TTTGGGA	2455	0.0	38.67617	4
CGGGTAT	105	0.0	38.57143	6
TTGGGAC	960	0.0	38.437504	5
GTTACCG	30	1.1392124E-4	37.500004	38
GCGATTC	120	0.0	37.500004	9