SRR2934022.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934022.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	791454
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGC	3102	0.39193686556641316	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCG	2452	0.3098095404154884	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	1884	0.23804289320668034	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1697	0.21441549350941433	No Hit
GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	1481	0.18712395161310702	No Hit
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	1315	0.16614989626687085	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	1237	0.15629461724875987	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGATACGTT	1124	0.1420170976455991	No Hit
TCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	1069	0.13506786244052085	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATTCG	20	7.031953E-4	45.000004	15
CGTAAAC	20	7.031953E-4	45.000004	20
CGATCGA	80	0.0	45.000004	41
TTGTTCG	265	0.0	41.603775	1
TCGTACG	60	3.6379788E-12	41.250004	30
CCGATCG	55	6.002665E-11	40.90909	40
ACCAACG	55	6.002665E-11	40.90909	36
CGTTAGG	50	1.0804797E-9	40.5	2
CGTTTGG	500	0.0	39.600002	2
CGTTTTT	1020	0.0	39.485294	1
TTTCGCG	275	0.0	39.272728	1
GCGATTT	440	0.0	38.863632	9
CCGATGA	635	0.0	38.622047	18
TTGTGCG	210	0.0	38.57143	1
GTTTACG	35	6.245824E-6	38.571426	1
ACGATCG	35	6.245824E-6	38.571426	40
TTGGGAT	3030	0.0	38.09406	5
TTTGGGA	4690	0.0	38.091686	4
TTTGGGC	1655	0.0	37.794563	4
TGGGCGA	1030	0.0	37.79126	6