SRR2934021.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934021.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	108073
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	922	0.8531270530104652	No Hit
CTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT	637	0.5894164129801153	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	469	0.4339659304359091	No Hit
GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	383	0.3543900881811368	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	161	0.1489733791048643	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTG	149	0.13786977320884958	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCC	136	0.12584086682150028	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT	126	0.11658786190815466	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	118	0.1091854579774782	No Hit
TTTGTCGGGAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATGCC	111	0.10270835453813625	No Hit
TTTTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAGCTA	110	0.10178305404680171	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTGCG	30	2.147226E-6	45.000004	1
CTCGTTG	20	7.004915E-4	45.000004	1
ACGCCGG	30	2.147226E-6	45.000004	27
CATGCAC	65	0.0	45.000004	45
CTTTTCG	40	6.717528E-9	45.000004	1
TATGGGA	30	2.147226E-6	45.000004	4
TGGGTGA	30	2.147226E-6	45.000004	6
TTATGGG	40	6.717528E-9	45.000004	3
CACGCCG	30	2.147226E-6	45.000004	26
GAATCCA	40	6.717528E-9	45.000004	9
TTCGTTG	30	2.147226E-6	45.000004	1
GCTTGCG	20	7.004915E-4	45.000004	1
TATTGGG	40	6.717528E-9	45.000004	3
GGCCACC	20	7.004915E-4	45.000004	8
TTCCCCG	20	7.004915E-4	45.000004	1
AGTGCCC	20	7.004915E-4	45.000004	13
ACCTACA	20	7.004915E-4	45.000004	25
CACTCAG	20	7.004915E-4	45.000004	21
CTACGGG	20	7.004915E-4	45.000004	3
TCTCGTG	20	7.004915E-4	45.000004	1