SRR2934018.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934018.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	509401
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	1587	0.3115423801680798	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT	1389	0.27267319852140065	Illumina Single End Adapter 1 (95% over 21bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	888	0.17432239041540948	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	851	0.16705895748143407	No Hit
TCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	849	0.16666633948500298	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC	709	0.1391830797348258	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	642	0.12603037685438387	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	573	0.11248505597751084	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	541	0.1062031680346132	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	531	0.1042400780524577	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCCG	20	7.029585E-4	45.0	24
CGAACGA	20	7.029585E-4	45.0	22
GCGAATT	20	7.029585E-4	45.0	27
TGACCGA	20	7.029585E-4	45.0	43
ACGAACG	20	7.029585E-4	45.0	21
CCGATCG	30	2.163113E-6	44.999996	40
ATAAGCG	30	2.163113E-6	44.999996	33
CGATCGA	30	2.163113E-6	44.999996	41
CTATCGT	60	3.6379788E-12	41.249996	33
TATCGCA	50	1.0786607E-9	40.500004	11
CGTTTTT	555	0.0	40.135136	1
CGTAGGG	80	0.0	39.375	3
GGTATGC	40	3.4531695E-7	39.375	8
TGCGGGA	505	0.0	38.76238	4
CCGATAA	35	6.241442E-6	38.571426	15
TTTCGCG	140	0.0	38.571426	1
GACCGAC	35	6.241442E-6	38.571426	9
ATCCGAG	35	6.241442E-6	38.571426	15
TACGAAA	35	6.241442E-6	38.571426	20
CGATAAC	35	6.241442E-6	38.571426	16