SRR2934017.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934017.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	458910
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	847	0.18456778017476194	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGC	800	0.17432612059009392	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCG	708	0.15427861672223311	No Hit
CCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	703	0.15318907846854501	Illumina PCR Primer Index 8 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	647	0.14098625002723844	No Hit
GCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	595	0.12965505218888235	Illumina PCR Primer Index 8 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGCT	589	0.12834760628445666	Illumina PCR Primer Index 8 (95% over 24bp)
GCGCTCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	561	0.12224619206380337	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTC	536	0.11679850079536291	No Hit
TCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	497	0.10830010241659584	Illumina PCR Primer Index 8 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGCTC	20	7.0288515E-4	45.000004	39
TAGCGTC	20	7.0288515E-4	45.000004	10
TACGGGA	25	3.8871294E-5	45.000004	4
TACGAAT	25	3.8871294E-5	45.000004	12
TACGAAA	25	3.8871294E-5	45.000004	20
ATACGAA	25	3.8871294E-5	45.000004	19
GCCGTAC	20	7.0288515E-4	45.000004	31
TGGTCGA	20	7.0288515E-4	45.000004	14
CCGATGA	180	0.0	42.5	18
TCGCTTG	90	0.0	42.5	1
TAGCGGG	65	0.0	41.53846	3
CAATCGG	60	3.6379788E-12	41.249996	20
CGGGTAC	55	6.002665E-11	40.909092	6
CGACGCG	55	6.002665E-11	40.909092	13
GCGTCCC	55	6.002665E-11	40.909092	7
CGGGTAT	100	0.0	40.500004	6
CACCGCT	45	1.9239451E-8	40.0	38
TTTCTCG	210	0.0	39.642857	1
TCACGGG	40	3.452169E-7	39.375004	3
CGGGCTA	40	3.452169E-7	39.375004	6