##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934017.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 458910 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.066485803316553 31.0 30.0 31.0 26.0 34.0 2 30.4100738706936 31.0 30.0 33.0 27.0 34.0 3 30.388219912401123 31.0 30.0 34.0 26.0 34.0 4 34.07821795123227 35.0 33.0 37.0 30.0 37.0 5 34.4774596326077 35.0 35.0 37.0 32.0 37.0 6 33.971135952583296 35.0 35.0 37.0 30.0 37.0 7 34.40397463554945 35.0 35.0 37.0 32.0 37.0 8 34.57690178902181 35.0 35.0 37.0 32.0 37.0 9 35.93310235122355 37.0 35.0 39.0 31.0 39.0 10 35.39474624654071 37.0 34.0 39.0 30.0 39.0 11 35.51823887036674 37.0 35.0 39.0 30.0 39.0 12 35.36777799568543 37.0 35.0 39.0 30.0 39.0 13 35.248970386350265 37.0 34.0 39.0 30.0 39.0 14 35.763496110348434 38.0 34.0 40.0 27.0 41.0 15 36.1171645856486 38.0 34.0 40.0 29.0 41.0 16 36.32778322546905 38.0 35.0 40.0 30.0 41.0 17 36.148273081867906 38.0 34.0 40.0 30.0 41.0 18 36.306465319997386 38.0 35.0 40.0 30.0 41.0 19 36.27915277505393 38.0 35.0 40.0 30.0 41.0 20 36.29864243533591 38.0 34.0 40.0 30.0 41.0 21 35.9590268244318 38.0 34.0 40.0 29.0 41.0 22 36.202468893682855 38.0 34.0 40.0 30.0 41.0 23 36.30948769911311 38.0 34.0 40.0 30.0 41.0 24 36.247595389074114 38.0 34.0 40.0 30.0 41.0 25 35.76997014665185 38.0 34.0 40.0 29.0 41.0 26 35.86976967161317 38.0 34.0 40.0 30.0 41.0 27 35.909812381512715 38.0 34.0 40.0 30.0 41.0 28 35.80160815846244 38.0 34.0 40.0 29.0 41.0 29 35.91461070798196 38.0 34.0 40.0 30.0 41.0 30 35.4557756422828 38.0 34.0 40.0 28.0 41.0 31 35.60192630363252 38.0 34.0 40.0 29.0 41.0 32 35.60486369876446 38.0 34.0 40.0 29.0 41.0 33 35.6569567017498 38.0 34.0 40.0 29.0 41.0 34 35.58657253056155 38.0 34.0 40.0 29.0 41.0 35 35.63199538035781 38.0 34.0 40.0 29.0 41.0 36 35.395999215532456 38.0 34.0 40.0 28.0 41.0 37 35.45216709158659 38.0 34.0 40.0 29.0 41.0 38 35.35893312414199 38.0 34.0 40.0 28.0 41.0 39 35.31267132989039 37.0 34.0 40.0 28.0 41.0 40 35.1813885075505 37.0 34.0 40.0 27.0 41.0 41 35.04638818068902 37.0 33.0 40.0 27.0 41.0 42 35.291067965396266 37.0 34.0 40.0 28.0 41.0 43 35.27360920441917 37.0 34.0 40.0 28.0 41.0 44 35.20140768342377 37.0 34.0 40.0 28.0 41.0 45 35.239393345100346 37.0 34.0 40.0 28.0 41.0 46 35.10462617942516 37.0 34.0 40.0 28.0 41.0 47 35.044485846898084 37.0 33.0 40.0 28.0 41.0 48 35.026456167876056 36.0 34.0 40.0 28.0 41.0 49 35.04605914013641 36.0 34.0 40.0 28.0 41.0 50 34.84761935891569 36.0 33.0 40.0 27.0 41.0 51 33.70859209866858 35.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 6.0 10 16.0 11 7.0 12 15.0 13 18.0 14 25.0 15 42.0 16 72.0 17 124.0 18 206.0 19 374.0 20 754.0 21 1217.0 22 1788.0 23 2406.0 24 3113.0 25 4276.0 26 5600.0 27 7054.0 28 8720.0 29 11110.0 30 14398.0 31 18682.0 32 24019.0 33 32044.0 34 44174.0 35 43439.0 36 51483.0 37 66129.0 38 78756.0 39 38838.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.236081148809138 4.832755878058879 52.56825957159356 16.36290340153843 2 20.36041925432002 4.738183957638753 52.63668257392518 22.264714214116058 3 22.855243947615 5.282735176832058 50.466322372578496 21.39569850297444 4 20.208755529406638 5.282299361530583 46.5006210368046 28.00832407225818 5 20.27173084046981 5.910309210956396 48.94314789392256 24.874812054651237 6 22.502887276372274 7.431958336057179 51.48046457911137 18.584689808459174 7 85.15547710880129 2.606611318123379 8.390969906953433 3.8469416661218974 8 87.01945915321086 3.757817436970212 5.40062321588111 3.822100193937809 9 81.48198993266654 5.407378353053976 7.343269922206969 5.76736179207252 10 43.12109128151489 27.73746486239132 14.686975659715412 14.454468196378375 11 36.46749907389248 23.86764289294197 22.38434551437101 17.280512518794534 12 30.222701619053844 24.109956200562202 26.452681353642326 19.21466082674163 13 26.798500795362923 25.10884487154344 28.88409492057266 19.208559412520973 14 21.73585234577586 27.266130613845853 30.98298141247739 20.015035627900897 15 20.125514806824867 23.890087380967945 34.71552156196204 21.268876250245146 16 25.869342572617725 24.326120590093918 29.526486674947154 20.2780501623412 17 25.755158963631214 24.05417184197337 27.326055217798697 22.86461397659672 18 27.36353533372557 22.656947985443768 28.859907171340787 21.119609509489877 19 27.055631823233313 24.872415070493126 26.437427818090693 21.634525288182868 20 28.10660042274084 27.0769867730056 26.385347889564404 18.431064914689156 21 25.97698895208211 26.88413850210281 28.964284936044105 18.174587609770978 22 25.406942537752503 22.395894619860105 30.720184785687827 21.47697805669957 23 23.754766729859885 25.76649016146957 28.980628009849426 21.49811509882112 24 23.21936763199756 25.808328430411194 29.60057527619795 21.371728661393302 25 24.14678259353686 27.251966616547907 26.389052319626945 22.212198470288293 26 22.558453727310365 27.103135691094117 26.836416726591274 23.50199385500425 27 22.94131746965636 26.016866052167092 29.357390337974763 21.684426140201783 28 20.308339325793728 28.017694101239893 28.73243119565928 22.941535377307098 29 22.306334575406943 27.30557189862936 28.179817393388685 22.208276132575016 30 24.55623106927284 25.88873635353337 29.13381708831797 20.421215488875816 31 26.64051774857815 26.086160685101657 26.48623913185592 20.787082434464274 32 27.702381730622562 26.412368438255868 25.86040835893748 20.02484147218409 33 26.126255692837375 25.69610599028132 25.669739164542065 22.507899152339238 34 22.014556231069275 26.074829487263294 30.042927807195312 21.86768647447212 35 22.574360985814213 27.699766838813712 28.1179316205792 21.60794055479288 36 25.442025669521257 29.103310017214707 24.492166219955983 20.962498093308056 37 23.671308099627378 28.4742106295352 25.086400383517464 22.768080887319954 38 23.891176919221635 28.991741300037045 24.95718114663006 22.159900634111263 39 22.807304264452725 26.598679479636527 25.948878865136955 24.64513739077379 40 25.50587261118738 25.916846440478526 26.104247020112876 22.47303392822122 41 21.13028698437602 26.273779172386742 25.330456952343596 27.26547689089364 42 23.74082064021268 24.918829400100236 27.12078621080386 24.219563748883225 43 23.346189884726854 24.41088666623085 27.426074829487263 24.81684861955503 44 23.69767492536663 25.621363666078317 27.169815432219824 23.51114597633523 45 23.715107537425638 25.85757555947789 24.965679545008825 25.461637358087643 46 22.478917434791136 26.788477043428994 26.50824780458042 24.224357717199453 47 20.596849055370335 28.47268527598004 28.59079122267983 22.3396744459698 48 21.84589570939836 28.666840992787257 27.278333442287156 22.208929855527227 49 24.915778692989914 25.430040748730686 27.368547209692533 22.28563334858687 50 22.12568913294546 27.59037719814343 26.124512431631473 24.15942123727964 51 21.54191453661938 26.989823712710553 25.405417184197336 26.06284456647273 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 74.0 1 197.5 2 321.0 3 562.0 4 803.0 5 635.5 6 468.0 7 528.0 8 588.0 9 605.5 10 623.0 11 624.5 12 626.0 13 679.0 14 732.0 15 774.0 16 816.0 17 820.0 18 824.0 19 1042.0 20 1260.0 21 1456.0 22 1652.0 23 1784.0 24 1916.0 25 2416.0 26 3809.0 27 4702.0 28 5584.5 29 6467.0 30 6891.5 31 7316.0 32 9088.5 33 10861.0 34 12215.5 35 13570.0 36 14066.0 37 14562.0 38 16907.0 39 19252.0 40 20124.0 41 20996.0 42 23126.0 43 25256.0 44 26297.0 45 27338.0 46 28562.0 47 29786.0 48 32780.5 49 35775.0 50 37525.0 51 39275.0 52 38317.0 53 37359.0 54 35617.5 55 33876.0 56 32009.5 57 30143.0 58 27604.0 59 25065.0 60 21859.0 61 18653.0 62 16362.0 63 14071.0 64 12492.0 65 10913.0 66 9168.0 67 7423.0 68 5848.0 69 4273.0 70 3718.5 71 3164.0 72 2623.0 73 2082.0 74 1733.0 75 1129.0 76 874.0 77 674.0 78 474.0 79 370.0 80 266.0 81 170.0 82 74.0 83 46.5 84 19.0 85 13.5 86 8.0 87 10.0 88 12.0 89 7.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 458910.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.90958935578025 #Duplication Level Percentage of deduplicated Percentage of total 1 74.0733259412402 23.63649413001839 2 8.678595631433609 5.538608455678296 3 2.9633563779732306 2.836784554078743 4 1.6031953358886593 2.046292193012372 5 1.1211940041033095 1.78884201295498 6 0.8771601325615639 1.6793891777580765 7 0.7864610567142115 1.7566954554844445 8 0.7096000399673826 1.8114436705763541 9 0.6685170655377097 1.9198894534775597 >10 8.371222608448656 51.25195329091893 >50 0.10309107565068118 2.195859116276184 >100 0.03805375275696285 2.216170702712682 >500 0.006226977723866648 1.3215777870530099 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 847 0.18456778017476194 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGC 800 0.17432612059009392 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCG 708 0.15427861672223311 No Hit CCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC 703 0.15318907846854501 Illumina PCR Primer Index 8 (95% over 23bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 647 0.14098625002723844 No Hit GCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC 595 0.12965505218888235 Illumina PCR Primer Index 8 (95% over 23bp) CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGCT 589 0.12834760628445666 Illumina PCR Primer Index 8 (95% over 24bp) GCGCTCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 561 0.12224619206380337 No Hit GAATCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTC 536 0.11679850079536291 No Hit TCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC 497 0.10830010241659584 Illumina PCR Primer Index 8 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13946089647207513 0.0 2 0.0 0.0 0.0 0.5914013641018936 0.0 3 0.0 0.0 0.0 0.776840774879606 0.0 4 0.0 0.0 0.0 1.0823473012137457 0.0 5 0.0 0.0 0.0 1.6765814647752282 0.0 6 0.0 0.0 0.0 1.9781656533960907 0.0 7 0.0 0.0 0.0 2.2823647338258044 0.0 8 0.0 0.0 0.0 2.752609444117583 0.0 9 0.0 0.0 0.0 2.9709529101566754 0.0 10 0.0 0.0 0.0 3.55494541413349 0.0 11 0.0 0.0 0.0 4.3282996666012945 0.0 12 0.0 0.0 0.0 5.2509206598243665 0.0 13 0.0 0.0 0.0 5.496502582205661 0.0 14 0.0 0.0 0.0 5.603277331067094 0.0 15 0.0 0.0 0.0 5.78108997406899 0.0 16 0.0 0.0 0.0 6.134754091216142 0.0 17 0.0 0.0 0.0 6.654681745876098 0.0 18 0.0 0.0 0.0 7.228214682617507 0.0 19 0.0 0.0 0.0 7.666644875901593 0.0 20 0.0 0.0 0.0 8.114445098167396 0.0 21 0.0 0.0 0.0 8.67664683707045 0.0 22 0.0 0.0 0.0 9.268919831775294 0.0 23 0.0 0.0 0.0 9.841363230263015 0.0 24 0.0 0.0 0.0 10.282408315355951 0.0 25 0.0 0.0 0.0 10.70776404959578 0.0 26 0.0 0.0 0.0 11.08735917718071 0.0 27 0.0 0.0 0.0 11.508356758405787 0.0 28 0.0 0.0 0.0 11.928046893726439 0.0 29 0.0 0.0 0.0 12.405482556492558 0.0 30 0.0 0.0 0.0 13.047002680264104 0.0 31 0.0 0.0 0.0 13.502429670305725 0.0 32 0.0 0.0 0.0 13.96003573685472 0.0 33 0.0 0.0 0.0 14.4540323810769 0.0 34 0.0 0.0 0.0 14.977228650497919 0.0 35 0.0 0.0 0.0 15.552722756095967 0.0 36 0.0 0.0 0.0 16.07373994900961 0.0 37 0.0 0.0 0.0 16.57579917630908 0.0 38 0.0 0.0 0.0 17.19029875138916 0.0 39 0.0 0.0 0.0 18.20662003442941 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGCTC 20 7.0288515E-4 45.000004 39 TAGCGTC 20 7.0288515E-4 45.000004 10 TACGGGA 25 3.8871294E-5 45.000004 4 TACGAAT 25 3.8871294E-5 45.000004 12 TACGAAA 25 3.8871294E-5 45.000004 20 ATACGAA 25 3.8871294E-5 45.000004 19 GCCGTAC 20 7.0288515E-4 45.000004 31 TGGTCGA 20 7.0288515E-4 45.000004 14 CCGATGA 180 0.0 42.5 18 TCGCTTG 90 0.0 42.5 1 TAGCGGG 65 0.0 41.53846 3 CAATCGG 60 3.6379788E-12 41.249996 20 CGGGTAC 55 6.002665E-11 40.909092 6 CGACGCG 55 6.002665E-11 40.909092 13 GCGTCCC 55 6.002665E-11 40.909092 7 CGGGTAT 100 0.0 40.500004 6 CACCGCT 45 1.9239451E-8 40.0 38 TTTCTCG 210 0.0 39.642857 1 TCACGGG 40 3.452169E-7 39.375004 3 CGGGCTA 40 3.452169E-7 39.375004 6 >>END_MODULE