SRR2934016.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934016.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	969197
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC	5514	0.568924583959711	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG	5270	0.5437491036394045	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	3548	0.3660762466247832	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2259	0.23307954935890227	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAGTTACT	2203	0.2273015702689959	No Hit
GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	1962	0.2024356245427916	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1614	0.16652961162694477	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	1550	0.15992620695276605	No Hit
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	1258	0.12979817312682562	TruSeq Adapter, Index 27 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTA	1080	0.11143245387676604	No Hit
TCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	1027	0.10596400938096176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTCGA	145	0.0	41.89655	41
TACGGCT	800	0.0	40.78125	7
CGATGAA	1305	0.0	40.689655	19
CACTCGA	50	1.0804797E-9	40.5	41
CGATCGA	50	1.0804797E-9	40.5	41
TCGAATA	50	1.0804797E-9	40.5	44
CCGATGA	1330	0.0	39.924812	18
TTAATCG	40	3.4574805E-7	39.375	20
CGTTTTT	1605	0.0	38.971962	1
GATGAAT	1585	0.0	38.753944	20
GACCGAT	395	0.0	38.734177	9
TTTGGGC	1780	0.0	38.300564	4
CTCGAAT	160	0.0	37.96875	43
ATGAATG	1630	0.0	37.684048	21
CGATCAA	30	1.1397897E-4	37.500004	41
TGAATGA	1615	0.0	37.47678	22
TTTGGGA	3785	0.0	37.450462	4
TTGGGAC	1440	0.0	37.1875	5
ACGGCTG	890	0.0	37.16292	8
TCGAATG	140	0.0	36.964283	44