SRR2934015.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934015.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	93482
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	718	0.7680623007637835	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT	597	0.638625617765987	TruSeq Adapter, Index 22 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	458	0.48993389101645235	TruSeq Adapter, Index 20 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	411	0.4396568323313579	TruSeq Adapter, Index 20 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCC	140	0.149761451402409	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG	125	0.13371558160929375	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	124	0.13264585695641942	No Hit
TTGTTGGGTGTTATGTATTGTGGTTTTTTTGTTTGTTTTATTTTGTTCTAA	115	0.12301833508055027	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGC	100	0.10697246528743501	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	98	0.10483301598168632	No Hit
TTATCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGT	97	0.10376329132881196	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTCAG	30	2.1440883E-6	45.000004	11
TTAGGGA	30	2.1440883E-6	45.000004	4
CTCGTAC	25	3.8632672E-5	45.000004	29
CGCGGGA	25	3.8632672E-5	45.000004	4
CGGTTGG	30	2.1440883E-6	45.000004	2
GGACTGA	30	2.1440883E-6	45.000004	8
CAGCACA	50	2.1827873E-11	45.000004	45
TTATGAG	25	3.8632672E-5	45.000004	6
ATTGTCT	30	2.1440883E-6	45.000004	24
TACGGTT	35	1.1959855E-7	45.000004	33
CCTCCGC	30	2.1440883E-6	45.000004	45
TGTTCGG	35	1.1959855E-7	45.000004	2
CTTTGCG	35	1.1959855E-7	45.000004	1
CTCGCGG	25	3.8632672E-5	45.000004	2
TCGTACG	25	3.8632672E-5	45.000004	30
TTCGGGT	25	3.8632672E-5	45.000004	4
TGAGGTC	30	2.1440883E-6	45.000004	9
TGGGACG	30	2.1440883E-6	45.000004	6
AGGGCGA	25	3.8632672E-5	45.000004	6
CATTTAT	25	3.8632672E-5	45.000004	12