SRR2934012.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934012.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	111545
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	481	0.43121610112510644	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	302	0.27074274956295663	TruSeq Adapter, Index 15 (95% over 22bp)
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	290	0.25998475951409744	No Hit
TCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	210	0.1882648258550361	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	164	0.1470258640010758	TruSeq Adapter, Index 14 (95% over 21bp)
TTTGTAGGGAAGAAAGAAGAAAAGAAAAGGCATAAGTCCTCGTCCTCCTCC	134	0.1201308888789278	No Hit
TTTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	130	0.11654489219597472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAG	25	3.8681086E-5	45.000004	30
CGGGTAT	25	3.8681086E-5	45.000004	6
CGACGAC	25	3.8681086E-5	45.000004	35
TCGGGAT	30	2.1478481E-6	45.000004	5
TGCGGGC	30	2.1478481E-6	45.000004	4
CGGGGTT	25	3.8681086E-5	45.000004	6
CGGGCTC	30	2.1478481E-6	45.000004	6
GTATCTA	30	2.1478481E-6	45.000004	24
GATGCCA	25	3.8681086E-5	45.000004	9
ATTGGGA	30	2.1478481E-6	45.000004	4
GAATTAA	25	3.8681086E-5	45.000004	44
ACGACAT	25	3.8681086E-5	45.000004	37
GTAGTCA	25	3.8681086E-5	45.000004	10
GGTAGTC	25	3.8681086E-5	45.000004	9
CTGTAAC	20	7.005885E-4	45.0	14
TTTCGCG	45	3.783498E-10	45.0	1
TGGGTCC	35	1.1987868E-7	45.0	6
TGTGGGC	45	3.783498E-10	45.0	4
TGGGTAC	20	7.005885E-4	45.0	6
GTAGGAT	20	7.005885E-4	45.0	13