SRR2934011.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934011.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	485121
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGC	3759	0.7748582312454007	No Hit
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	3251	0.6701420882625159	TruSeq Adapter, Index 21 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCG	2929	0.6037668952694276	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC	2639	0.5439879947477021	No Hit
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT	1849	0.38114202436093264	TruSeq Adapter, Index 15 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	1819	0.37495800016903	TruSeq Adapter, Index 21 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACCAGTAT	1217	0.25086524805151705	No Hit
TCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	1210	0.24942230907340643	TruSeq Adapter, Index 21 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTC	778	0.16037236071000843	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTACCAGTATCGTA	777	0.16016622657027835	No Hit
GAACTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT	725	0.14944725130431377	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCC	718	0.14800431232620315	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCT	643	0.13254425184644655	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	610	0.12574182523535365	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	504	0.10389160642396433	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	50	2.1827873E-11	45.0	31
GCGAACC	20	7.0292514E-4	45.0	33
CCAATGG	20	7.0292514E-4	45.0	15
TATACCA	20	7.0292514E-4	45.0	44
CGATCGA	35	1.2099918E-7	45.0	41
TCACGTC	25	3.8874616E-5	45.0	39
TAATCGT	20	7.0292514E-4	45.0	21
AGACACG	145	0.0	43.448273	24
CACGACC	150	0.0	42.0	27
ACGACCA	150	0.0	42.0	28
CCGATGA	280	0.0	41.785713	18
TTGTTCG	110	0.0	40.909092	1
ACACGAC	155	0.0	40.64516	26
TACGGGA	50	1.0786607E-9	40.5	4
TACGAAT	50	1.0786607E-9	40.5	12
GCGATTC	100	0.0	40.5	9
GGCGAAC	50	1.0786607E-9	40.5	32
TGGTCAA	175	0.0	39.857143	14
TTCTCGG	350	0.0	39.857143	2
GGGCGAT	1005	0.0	39.402985	7