SRR2934008.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934008.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	457852
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	1459	0.31866192568777685	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	1374	0.3000969745682011	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGC	1315	0.2872107143793191	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCG	1190	0.2599093156740606	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	1047	0.22867651555524496	No Hit
TCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	1028	0.22452670295204563	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC	860	0.18783362309217824	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	847	0.18499427762683138	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	529	0.11553951932065383	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCAAGCGT	505	0.1102976507692442	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	488	0.10658466054532907	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGTA	20	7.0288347E-4	45.000004	41
CTATGCG	20	7.0288347E-4	45.000004	1
TAATACG	20	7.0288347E-4	45.000004	26
ACCGGGT	20	7.0288347E-4	45.000004	4
CGAACGA	20	7.0288347E-4	45.000004	22
CGACGTT	20	7.0288347E-4	45.000004	27
TAGCCGT	20	7.0288347E-4	45.000004	44
CCGTCGA	30	2.1626292E-6	45.000004	41
CCCCGGT	30	2.1626292E-6	45.000004	3
TACGAAT	30	2.1626292E-6	45.000004	12
GATATCG	20	7.0288347E-4	45.000004	45
TTACCCG	20	7.0288347E-4	45.000004	27
TCGACGT	20	7.0288347E-4	45.000004	26
TTCGACG	20	7.0288347E-4	45.000004	25
CGATAAC	20	7.0288347E-4	45.000004	16
ACGAACG	20	7.0288347E-4	45.000004	21
TACGGGC	50	2.1827873E-11	45.0	4
TACGCGG	25	3.8871167E-5	45.0	2
ATGGTAA	25	3.8871167E-5	45.0	36
TGTTTCG	100	0.0	42.75	1