SRR2934005.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934005.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	288311
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGC	2400	0.832434419775867	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCG	2027	0.703060237035701	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC	1297	0.4498614343538748	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	1118	0.3877757005455914	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCGTAGT	1059	0.3673116877261013	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	917	0.31805931788936254	No Hit
CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	890	0.308694430666884	No Hit
TCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	802	0.27817183527510225	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTA	533	0.18486981072522382	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	367	0.12729309669072633	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTC	366	0.12694624901581972	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	341	0.11827505714315445	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCT	319	0.110644408295209	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAT	50	2.1827873E-11	45.000004	43
GCCGGGT	25	3.8835118E-5	45.000004	4
CGACCAA	25	3.8835118E-5	45.000004	34
ATCCGGC	25	3.8835118E-5	45.000004	6
TTAGTCA	25	3.8835118E-5	45.000004	32
CGGTCGA	25	3.8835118E-5	45.000004	41
TTGTTCG	35	1.2076998E-7	45.000004	1
GCGTCCC	25	3.8835118E-5	45.000004	7
TTCGATA	25	3.8835118E-5	45.000004	15
TGCGTTA	25	3.8835118E-5	45.000004	22
CCTTACA	20	7.0244865E-4	45.0	7
CGCGGAA	20	7.0244865E-4	45.0	41
CGTGAGT	20	7.0244865E-4	45.0	29
ATGTCGT	20	7.0244865E-4	45.0	38
TCGATAT	20	7.0244865E-4	45.0	16
GTAATAG	20	7.0244865E-4	45.0	13
TAGCACA	20	7.0244865E-4	45.0	44
ATGCGTT	20	7.0244865E-4	45.0	21
GTGAGTC	20	7.0244865E-4	45.0	30
TATACGA	20	7.0244865E-4	45.0	16